RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 AKAP5P24588 427 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 GRIK3Q13003 919 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 SMAD4Q13485 552 aaKnown RBP18.34■□□□□ 0.53
USHBP1-208ENST00000598309 GIT2Q14161 759 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 KARSQ15046 597 aaKnown RBP18.34■□□□□ 0.53
USHBP1-208ENST00000598309 NT5DC1Q5TFE4 455 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 ATF7IP2Q5U623 682 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 FAM173BQ6P4H8 233 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 COLGALT2Q8IYK4 626 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 VPS52Q8N1B4 723 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 MRPL43Q8N983 215 aaKnown RBP18.34■□□□□ 0.53
USHBP1-208ENST00000598309 GSTCDQ8NEC7 633 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 RASSF8Q8NHQ8 419 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 BCL7CQ8WUZ0 217 aaPredicted RBP18.34■□□□□ 0.53
USHBP1-208ENST00000598309 MSLNLQ96KJ4 702 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 NECAB3Q96P71 396 aaPredicted RBP18.34■□□□□ 0.53
USHBP1-208ENST00000598309 NTPCRQ9BSD7 190 aaKnown RBP18.34■□□□□ 0.53
USHBP1-208ENST00000598309 BLOC1S4Q9NUP1 217 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 PARP2Q9UGN5 583 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 CD207Q9UJ71 328 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 ODF2LQ9ULJ1 636 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 FAN1Q9Y2M0 1017 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 SRPRBQ9Y5M8 271 aaKnown RBP18.34■□□□□ 0.53
USHBP1-208ENST00000598309 IRAK3Q9Y616 596 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 NCOR1O75376 2440 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 C2orf71A6NGG8 1288 aa18.33■□□□□ 0.52
USHBP1-208ENST00000598309 HSP90AA1P07900 732 aaKnown RBP18.33■□□□□ 0.52
USHBP1-208ENST00000598309 IL9P15248 144 aa18.33■□□□□ 0.52
USHBP1-208ENST00000598309 PLCG1P19174 1290 aa18.33■□□□□ 0.52
USHBP1-208ENST00000598309 COASYQ13057 564 aa18.33■□□□□ 0.52
USHBP1-208ENST00000598309 EEF1DP3Q658K8 133 aa18.33■□□□□ 0.52
USHBP1-208ENST00000598309 TMEM184AQ6ZMB5 413 aa18.33■□□□□ 0.52
USHBP1-208ENST00000598309 RAD54LQ92698 747 aa18.33■□□□□ 0.52
USHBP1-208ENST00000598309 KCNN1Q92952 543 aa18.33■□□□□ 0.52
USHBP1-208ENST00000598309 USP28Q96RU2 1077 aa18.33■□□□□ 0.52
USHBP1-208ENST00000598309 RPS6KC1Q96S38 1066 aa18.33■□□□□ 0.52
USHBP1-208ENST00000598309 MRPL4Q9BYD3 311 aaKnown RBP18.33■□□□□ 0.52
USHBP1-208ENST00000598309 MIOSQ9NXC5 875 aa18.33■□□□□ 0.52
USHBP1-208ENST00000598309 CLEC1BQ9P126 229 aa18.33■□□□□ 0.52
USHBP1-208ENST00000598309 TNFSF13BQ9Y275 285 aa18.33■□□□□ 0.52
USHBP1-208ENST00000598309 TCF20Q9UGU0 1960 aaKnown RBP18.32■□□□□ 0.52
USHBP1-208ENST00000598309 H0YCG3 227 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 NRP1O14786 923 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 PER2O15055 1255 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 NR1I2O75469 434 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 RECQL4O94761 1208 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 SCP2P22307 547 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 MARCKSP29966 332 aaPredicted RBP18.32■□□□□ 0.52
USHBP1-208ENST00000598309 NASPP49321 788 aaPredicted RBP18.32■□□□□ 0.52
USHBP1-208ENST00000598309 SMTNP53814 917 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 KCNC3Q14003 757 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 SLC39A14Q15043 492 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 ARSHQ5FYA8 562 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 TAS1R3Q7RTX0 852 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 GPBP1Q86WP2 473 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 SMRP1Q8NCR6 262 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 VN1R2Q8NFZ6 395 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 LRRC15Q8TF66 581 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 ACO2Q99798 780 aaKnown RBP18.32■□□□□ 0.52
USHBP1-208ENST00000598309 VN1R3Q9BXE9 311 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 MARCH5Q9NX47 278 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 SNTG2Q9NY99 539 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 LARSQ9P2J5 1176 aaKnown RBP18.32■□□□□ 0.52
USHBP1-208ENST00000598309 PRKAG3Q9UGI9 489 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 USP20Q9Y2K6 914 aa18.32■□□□□ 0.52
USHBP1-208ENST00000598309 SFI1A8K8P3 1242 aa18.31■□□□□ 0.52
USHBP1-208ENST00000598309 SLC16A4O15374 487 aa18.31■□□□□ 0.52
USHBP1-208ENST00000598309 MBTPS2O43462 519 aa18.31■□□□□ 0.52
USHBP1-208ENST00000598309 TXLNAP40222 546 aa18.31■□□□□ 0.52
USHBP1-208ENST00000598309 RAD51AP2Q09MP3 1159 aa18.31■□□□□ 0.52
USHBP1-208ENST00000598309 SMAD2Q15796 467 aaKnown RBP18.31■□□□□ 0.52
USHBP1-208ENST00000598309 FAM178BQ8IXR5 827 aa18.31■□□□□ 0.52
USHBP1-208ENST00000598309 KRI1Q8N9T8 703 aaKnown RBP18.31■□□□□ 0.52
USHBP1-208ENST00000598309 TMEM161BQ8NDZ6 487 aa18.31■□□□□ 0.52
USHBP1-208ENST00000598309 LARP4BQ92615 738 aaKnown RBP18.31■□□□□ 0.52
USHBP1-208ENST00000598309 EPSTI1Q96J88 318 aa18.31■□□□□ 0.52
USHBP1-208ENST00000598309 REEP2Q9BRK0 252 aa18.31■□□□□ 0.52
USHBP1-208ENST00000598309 PTPRHQ9HD43 1115 aa18.31■□□□□ 0.52
USHBP1-208ENST00000598309 KLK14Q9P0G3 267 aa18.31■□□□□ 0.52
USHBP1-208ENST00000598309 STK17AQ9UEE5 414 aa18.31■□□□□ 0.52
USHBP1-208ENST00000598309 CCDC39Q9UFE4 941 aa18.31■□□□□ 0.52
USHBP1-208ENST00000598309 BARX2Q9UMQ3 279 aaPredicted RBP18.31■□□□□ 0.52
USHBP1-208ENST00000598309 PRG3Q9Y2Y8 225 aaPredicted RBP18.31■□□□□ 0.52
USHBP1-208ENST00000598309 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.3■□□□□ 0.52
USHBP1-208ENST00000598309 BRD1O95696 1058 aa18.3■□□□□ 0.52
USHBP1-208ENST00000598309 CXCL14O95715 111 aa18.3■□□□□ 0.52
USHBP1-208ENST00000598309 EFEMP2O95967 443 aa18.3■□□□□ 0.52
USHBP1-208ENST00000598309 MAPTP10636 758 aaKnown RBP18.3■□□□□ 0.52
USHBP1-208ENST00000598309 OR1G1P47890 313 aa18.3■□□□□ 0.52
USHBP1-208ENST00000598309 ZNF131P52739 623 aa18.3■□□□□ 0.52
USHBP1-208ENST00000598309 CEBPZQ03701 1054 aaKnown RBP18.3■□□□□ 0.52
USHBP1-208ENST00000598309 STRN3Q13033 797 aa18.3■□□□□ 0.52
USHBP1-208ENST00000598309 PTPN14Q15678 1187 aa18.3■□□□□ 0.52
USHBP1-208ENST00000598309 CLUL1Q15846 466 aa18.3■□□□□ 0.52
USHBP1-208ENST00000598309 RNF168Q8IYW5 571 aaPredicted RBP18.3■□□□□ 0.52
USHBP1-208ENST00000598309 ZNF396Q96N95 335 aaPredicted RBP18.3■□□□□ 0.52
USHBP1-208ENST00000598309 HERC2P3Q9BVR0 1158 aa18.3■□□□□ 0.52
USHBP1-208ENST00000598309 COLEC11Q9BWP8 271 aa18.3■□□□□ 0.52
USHBP1-208ENST00000598309 CDT1Q9H211 546 aa18.3■□□□□ 0.52
USHBP1-208ENST00000598309 NPHP3-ACAD11A0A0J9YXS1 232 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms