RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 HDAC6Q9UBN7 1215 aa10.41□□□□□ -0.74
TRIM28-208ENST00000597172 USP15Q9Y4E8 981 aaPredicted RBP10.41□□□□□ -0.74
TRIM28-208ENST00000597172 COL4A3BPQ9Y5P4 624 aa10.41□□□□□ -0.74
TRIM28-208ENST00000597172 SCN10AQ9Y5Y9 1956 aa10.41□□□□□ -0.74
TRIM28-208ENST00000597172 NRCAMQ92823 1304 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 MYH9P35579 1960 aaKnown RBP10.4□□□□□ -0.74
TRIM28-208ENST00000597172 MBLAC1A4D2B0 266 aaPredicted RBP10.4□□□□□ -0.74
TRIM28-208ENST00000597172 PPP1R3GB7ZBB8 358 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 MAGEB2O15479 319 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 NBNO60934 754 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 FAM13AO94988 1023 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 PLS3P13797 630 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 CLCN5P51795 746 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 PSMD2Q13200 908 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 ANGPT1Q15389 498 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 DPCR1Q3MIW9 517 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 ZNF658Q5TYW1 1059 aaPredicted RBP10.4□□□□□ -0.74
TRIM28-208ENST00000597172 IER5Q5VY09 327 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 EFCAB12Q6NXP0 572 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.4□□□□□ -0.745e-10■□□□□ 10.1
TRIM28-208ENST00000597172 GAS2L3Q86XJ1 694 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 EXOC8Q8IYI6 725 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 SMYD4Q8IYR2 804 aaPredicted RBP10.4□□□□□ -0.74
TRIM28-208ENST00000597172 MYOCDQ8IZQ8 938 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 LRRC71Q8N4P6 559 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 DCLK2Q8N568 766 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 MYCT1Q8N699 235 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 KIAA0895Q8NCT3 520 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 MCPH1Q8NEM0 835 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 ASAP3Q8TDY4 903 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 SLC7A3Q8WY07 619 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 RUBCNQ92622 972 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 NTPCRQ9BSD7 190 aaKnown RBP10.4□□□□□ -0.74
TRIM28-208ENST00000597172 STRA6Q9BX79 667 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 POLR3FQ9H1D9 316 aaPredicted RBP10.4□□□□□ -0.74
TRIM28-208ENST00000597172 ZHX3Q9H4I2 956 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 PARVGQ9HBI0 331 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 SLC39A2Q9NP94 309 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 EXOC1Q9NV70 894 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 RMND1Q9NWS8 449 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 TBC1D7Q9P0N9 293 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 CLEC1BQ9P126 229 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 GDAQ9Y2T3 454 aa10.4□□□□□ -0.74
TRIM28-208ENST00000597172 IGF2RP11717 2491 aa10.4□□□□□ -0.75
TRIM28-208ENST00000597172 GRM6O15303 877 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 TREHO43280 583 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 TBCAO75347 108 aaKnown RBP10.39□□□□□ -0.75
TRIM28-208ENST00000597172 AMHP03971 560 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 ADRB1P08588 477 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 CCDC192P0DO97 292 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 GAP43P17677 238 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 GLRA2P23416 452 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 NMT1P30419 496 aaKnown RBP10.39□□□□□ -0.75
TRIM28-208ENST00000597172 PRCPP42785 496 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 NPTX2P47972 431 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 CLCN3P51790 818 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 CASP5P51878 434 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 PTPN11Q06124 597 aaPredicted RBP10.39□□□□□ -0.75
TRIM28-208ENST00000597172 FAM26FQ5R3K3 315 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 ODR4Q5SWX8 454 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 GDF6Q6KF10 455 aaPredicted RBP10.39□□□□□ -0.75
TRIM28-208ENST00000597172 RUFY4Q6ZNE9 571 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 C11orf57Q6ZUT1 292 aaPredicted RBP10.39□□□□□ -0.75
TRIM28-208ENST00000597172 LRRC8DQ7L1W4 858 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 EPM2AIP1Q7L775 607 aaPredicted RBP10.39□□□□□ -0.75
TRIM28-208ENST00000597172 ZNF720Q7Z2F6 126 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 SESTD1Q86VW0 696 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 KSR1Q8IVT5 923 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 UBALD2Q8IYN6 164 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 KIAA0319LQ8IZA0 1049 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 METTL13Q8N6R0 699 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 C7orf31Q8N865 590 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 KREMEN2Q8NCW0 462 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 PRPF31Q8WWY3 499 aaKnown RBP10.39□□□□□ -0.75
TRIM28-208ENST00000597172 KIFAP3Q92845 792 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 DRC1Q96MC2 740 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 MED15Q96RN5 788 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 CTAGE1Q96RT6 745 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 YME1L1Q96TA2 773 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 ANP32EQ9BTT0 268 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 MFSD1Q9H3U5 465 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 OLFML3Q9NRN5 406 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 ANO10Q9NW15 660 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 SUCLA2Q9P2R7 463 aaPredicted RBP10.39□□□□□ -0.75
TRIM28-208ENST00000597172 GTF2IRD1Q9UHL9 959 aa10.39□□□□□ -0.75
TRIM28-208ENST00000597172 ASPMQ8IZT6 3477 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 C17orf102A2RUQ5 167 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 SOBPA7XYQ1 873 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 GAS2O43903 313 aaKnown RBP10.38□□□□□ -0.75
TRIM28-208ENST00000597172 RB1P06400 928 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 MYBP10242 640 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 MAPTP10636 758 aaKnown RBP10.38□□□□□ -0.75
TRIM28-208ENST00000597172 HOXD13P35453 343 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 PEX3P56589 373 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 DMWDQ09019 674 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 LAMTOR4Q0VGL1 99 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 STX1AQ16623 288 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 PTGISQ16647 500 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 ANO6Q4KMQ2 910 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 COBLL1Q53SF7 1204 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms