RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 BORCS6Q96GS4 357 aa15.98■□□□□ 0.15
VRK3-212ENST00000596814 PDZD7Q9H5P4 517 aa15.98■□□□□ 0.15
VRK3-212ENST00000596814 KIAA1586Q9HCI6 787 aa15.98■□□□□ 0.15
VRK3-212ENST00000596814 PTPRHQ9HD43 1115 aa15.98■□□□□ 0.15
VRK3-212ENST00000596814 INTS13Q9NVM9 706 aa15.98■□□□□ 0.15
VRK3-212ENST00000596814 LGALS16A8MUM7 142 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 TLR3O15455 904 aaKnown RBP15.97■□□□□ 0.15
VRK3-212ENST00000596814 PQBP1O60828 265 aaKnown RBP15.97■□□□□ 0.15
VRK3-212ENST00000596814 ADRB2P07550 413 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 KRT13P13646 458 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 VWA3BQ502W6 1294 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 DCAF17Q5H9S7 520 aaPredicted RBP15.97■□□□□ 0.15
VRK3-212ENST00000596814 FAM26DQ5JW98 314 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 MIIPQ5JXC2 388 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 SLC39A5Q6ZMH5 540 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 INTS8Q75QN2 995 aaKnown RBP15.97■□□□□ 0.15
VRK3-212ENST00000596814 FAM228AQ86W67 206 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 CDR2LQ86X02 465 aaPredicted RBP15.97■□□□□ 0.15
VRK3-212ENST00000596814 CBWD2Q8IUF1 395 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 CCDC155Q8N6L0 562 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 CAGE1Q8TC20 777 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 FAM213AQ9BRX8 229 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 CDT1Q9H211 546 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 RTN4Q9NQC3 1192 aaKnown RBP15.97■□□□□ 0.15
VRK3-212ENST00000596814 AGPAT5Q9NUQ2 364 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.97■□□□□ 0.15
VRK3-212ENST00000596814 OGTO15294 1046 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 CD4P01730 458 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 CKBP12277 381 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 CDC25BP30305 580 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 AXLP30530 894 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 PPP2R3AQ06190 1150 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 BFSP1Q12934 665 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 NR1I3Q14994 352 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 TCERG1LQ5VWI1 586 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 NOTUMQ6P988 496 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.97■□□□□ 0.15
VRK3-212ENST00000596814 ADPGKQ9BRR6 497 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 C11orf49Q9H6J7 331 aa15.97■□□□□ 0.15
VRK3-212ENST00000596814 NOC2LQ9Y3T9 749 aaKnown RBP15.97■□□□□ 0.15
VRK3-212ENST00000596814 A0A1B0GUA9 196 aa15.96■□□□□ 0.15
VRK3-212ENST00000596814 ZNF233A6NK53 670 aa15.96■□□□□ 0.15
VRK3-212ENST00000596814 RPS6KA5O75582 802 aa15.96■□□□□ 0.15
VRK3-212ENST00000596814 MCF2P10911 925 aa15.96■□□□□ 0.15
VRK3-212ENST00000596814 RBL2Q08999 1139 aa15.96■□□□□ 0.15
VRK3-212ENST00000596814 ZNF618Q5T7W0 954 aa15.96■□□□□ 0.15
VRK3-212ENST00000596814 ANKRD33Q7Z3H0 272 aa15.96■□□□□ 0.15
VRK3-212ENST00000596814 NDST4Q9H3R1 872 aa15.96■□□□□ 0.15
VRK3-212ENST00000596814 PIN4Q9Y237 131 aaKnown RBP15.96■□□□□ 0.15
VRK3-212ENST00000596814 TEX33O43247 280 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 FAM189A1O60320 539 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 HOXA11P31270 313 aaPredicted RBP15.95■□□□□ 0.14
VRK3-212ENST00000596814 ACOT2P49753 483 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 UBXN1Q04323 297 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 CYP24A1Q07973 514 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 CCDC173Q0VFZ6 552 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 DCAF4L1Q3SXM0 396 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 TRIM60Q495X7 471 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 FBXO47Q5MNV8 452 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 ZBTB41Q5SVQ8 909 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 FKBP15Q5T1M5 1219 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 C1orf53Q5VUE5 145 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 APBB1IPQ7Z5R6 666 aaPredicted RBP15.95■□□□□ 0.14
VRK3-212ENST00000596814 SLC35C1Q96A29 364 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 PAWRQ96IZ0 340 aaKnown RBP15.95■□□□□ 0.14
VRK3-212ENST00000596814 TANC1Q9C0D5 1861 aa15.95■□□□□ 0.14
VRK3-212ENST00000596814 AFPP02771 609 aaKnown RBP15.94■□□□□ 0.14
VRK3-212ENST00000596814 GHRP10912 638 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 VAMP7P51809 220 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 KCNH2Q12809 1159 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 BFSP2Q13515 415 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 SLC27A1Q6PCB7 646 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 CRELD2Q6UXH1 353 aaPredicted RBP15.94■□□□□ 0.14
VRK3-212ENST00000596814 USP37Q86T82 979 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 CCDC51Q96ER9 411 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 PDLIM2Q96JY6 352 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 MFSD14AQ96MC6 490 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 RBAKQ9NYW8 714 aaPredicted RBP15.94■□□□□ 0.14
VRK3-212ENST00000596814 ST3GAL5Q9UNP4 418 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 DCDC2CA8MYV0 355 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 GPR182O15218 404 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 TRIM49P0CI25 452 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 TRIM49CP0CI26 452 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 ENPEPQ07075 957 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 PAK2Q13177 524 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 LPIN1Q14693 890 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 SEZ6Q53EL9 994 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 TRAF7Q6Q0C0 670 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 LRRC8DQ7L1W4 858 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 NECAB2Q7Z6G3 386 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 BRSK2Q8IWQ3 736 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 DRC7Q8IY82 874 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 THNSL1Q8IYQ7 743 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 CEP120Q8N960 986 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 USP38Q8NB14 1042 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 PLEKHO2Q8TD55 490 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 TOX2Q96NM4 488 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 CPSF3Q9UKF6 684 aaKnown RBP15.94■□□□□ 0.14
VRK3-212ENST00000596814 SQORQ9Y6N5 450 aa15.94■□□□□ 0.14
VRK3-212ENST00000596814 PITPNM1O00562 1244 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms