RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 PSMB7Q99436 277 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 VAV2P52735 878 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 FMR1Q06787 632 aaKnown RBP eCLIP10.54□□□□□ -0.72
LIG3-216ENST00000593099 GIT2Q14161 759 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 ZNF410Q86VK4 478 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 GAS2L3Q86XJ1 694 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 RASAL3Q86YV0 1011 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 BBS5Q8N3I7 341 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 TRAPPC12Q8WVT3 735 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 CPSF3Q9UKF6 684 aaKnown RBP10.54□□□□□ -0.72
LIG3-216ENST00000593099 DIS3Q9Y2L1 958 aaKnown RBP10.54□□□□□ -0.72
LIG3-216ENST00000593099 TRPV2Q9Y5S1 764 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 COL1A1P02452 1464 aaPredicted RBP10.54□□□□□ -0.72
LIG3-216ENST00000593099 GOLGA8FQ08AF8 430 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 GOLGA8DPQ0D2H9 430 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 PTPN21Q16825 1174 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 CFAP221Q4G0U5 840 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 CEP128Q6ZU80 1094 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 KSR1Q8IVT5 923 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 CCDC170Q8IYT3 715 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 GABPB2Q8TAK5 448 aaPredicted RBP10.54□□□□□ -0.72
LIG3-216ENST00000593099 PRIMPOLQ96LW4 560 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 INPP4AQ96PE3 977 aaPredicted RBP10.54□□□□□ -0.72
LIG3-216ENST00000593099 NCAPGQ9BPX3 1015 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 KBTBD4Q9NVX7 518 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 ADAM22Q9P0K1 906 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 EML1O00423 815 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 PSMD10O75832 226 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 ITGB5P18084 799 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 PCSK1P29120 753 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 GTF2F1P35269 517 aaKnown RBP eCLIP10.53□□□□□ -0.72
LIG3-216ENST00000593099 PNPLA4P41247 253 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 RAB27AP51159 221 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 DBN1Q16643 649 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 ARL13BQ3SXY8 428 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 SGO2Q562F6 1265 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 ALKBH5Q6P6C2 394 aaKnown RBP10.53□□□□□ -0.72
LIG3-216ENST00000593099 CCDC60Q8IWA6 550 aaPredicted RBP10.53□□□□□ -0.72
LIG3-216ENST00000593099 NME8Q8N427 588 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 TEPSINQ96N21 525 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 ASIC3Q9UHC3 531 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 SCINQ9Y6U3 715 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 LAMB4A4D0S4 1761 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 NHSQ6T4R5 1651 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 CCDC85CA6NKD9 419 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 EZRP15311 586 aaKnown RBP10.53□□□□□ -0.72
LIG3-216ENST00000593099 ARL4AP40617 200 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 FUT2Q10981 343 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 DRAP1Q14919 205 aaPredicted RBP10.53□□□□□ -0.72
LIG3-216ENST00000593099 GJC2Q5T442 439 aaPredicted RBP10.53□□□□□ -0.72
LIG3-216ENST00000593099 CCDC25Q86WR0 208 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 SPATA2LQ8IUW3 424 aaPredicted RBP10.53□□□□□ -0.72
LIG3-216ENST00000593099 GPR161Q8N6U8 529 aaKnown RBP10.53□□□□□ -0.72
LIG3-216ENST00000593099 CCDC89Q8N998 374 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 ZCCHC17Q9NP64 241 aaKnown RBP10.53□□□□□ -0.72
LIG3-216ENST00000593099 KCNMB3Q9NPA1 279 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 AGPAT3Q9NRZ7 376 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 M0QYV0 167 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 GARTP22102 1010 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 MRPS9P82933 396 aaKnown RBP10.53□□□□□ -0.72
LIG3-216ENST00000593099 CCDC105Q8IYK2 499 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 MAML3Q96JK9 1138 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 KLK14Q9P0G3 267 aa10.53□□□□□ -0.72
LIG3-216ENST00000593099 ADORA2BP29275 332 aa10.52□□□□□ -0.72
LIG3-216ENST00000593099 GNA15P30679 374 aa10.52□□□□□ -0.72
LIG3-216ENST00000593099 PSMC6P62333 389 aa10.52□□□□□ -0.72
LIG3-216ENST00000593099 LONRF2Q1L5Z9 754 aa10.52□□□□□ -0.72
LIG3-216ENST00000593099 PLPPR4Q7Z2D5 763 aa10.52□□□□□ -0.72
LIG3-216ENST00000593099 NECAB2Q7Z6G3 386 aa10.52□□□□□ -0.72
LIG3-216ENST00000593099 LRRC8AQ8IWT6 810 aa10.52□□□□□ -0.72
LIG3-216ENST00000593099 DCP1BQ8IZD4 617 aaKnown RBP10.52□□□□□ -0.72
LIG3-216ENST00000593099 DUOX1Q9NRD9 1551 aa10.52□□□□□ -0.72
LIG3-216ENST00000593099 ADAMTS1Q9UHI8 967 aa10.52□□□□□ -0.72
LIG3-216ENST00000593099 DDX41Q9UJV9 622 aaKnown RBP10.52□□□□□ -0.72
LIG3-216ENST00000593099 STRIP2Q9ULQ0 834 aa10.52□□□□□ -0.72
LIG3-216ENST00000593099 PPP2R2CQ9Y2T4 447 aa10.52□□□□□ -0.72
LIG3-216ENST00000593099 TLL2Q9Y6L7 1015 aa10.52□□□□□ -0.72
LIG3-216ENST00000593099 KCNK3O14649 394 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 PRPSAP2O60256 369 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 TUBBP07437 444 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 TAF6P49848 677 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 STILQ15468 1287 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 RSAD2Q8WXG1 361 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 RASSF4Q9H2L5 321 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 PDE11AQ9HCR9 933 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 PDGFCQ9NRA1 345 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 CREBZFQ9NS37 354 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 ZNF214Q9UL59 606 aaPredicted RBP10.52□□□□□ -0.73
LIG3-216ENST00000593099 MROH7Q68CQ1 1323 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 GOLGA6CA6NDK9 693 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 GOLGA6BA6NDN3 693 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 PHF20L1A8MW92 1017 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 SART1O43290 800 aaKnown RBP10.52□□□□□ -0.73
LIG3-216ENST00000593099 DUSP11O75319 330 aaKnown RBP10.52□□□□□ -0.73
LIG3-216ENST00000593099 CALB1P05937 261 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 GOLGA6DP0CG33 693 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 FMO5P49326 533 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 PRKCZQ05513 592 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 C8orf74Q6P047 294 aa10.52□□□□□ -0.73
LIG3-216ENST00000593099 MICALCLQ6ZW33 695 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms