RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 KIAA1024Q9UPX6 916 aa12.43□□□□□ -0.42
SMAD4-211ENST00000590499 ARHGEF35A5YM69 484 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 GRM6O15303 877 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 CAPN5O15484 640 aaPredicted RBP12.42□□□□□ -0.42
SMAD4-211ENST00000590499 TSPAN1O60635 241 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 RAB27AP51159 221 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 SH3BP2P78314 561 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 CAMK1Q14012 370 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 TFDP1Q14186 410 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 NAALADL2Q58DX5 795 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 UBXN11Q5T124 520 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 KRT79Q5XKE5 535 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 CDCA2Q69YH5 1023 aaPredicted RBP12.42□□□□□ -0.42
SMAD4-211ENST00000590499 TWF2Q6IBS0 349 aaKnown RBP12.42□□□□□ -0.42
SMAD4-211ENST00000590499 LYPD8Q6UX82 237 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 LRRC55Q6ZSA7 311 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 KCNK18Q7Z418 384 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 BSNDQ8WZ55 320 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 PNMA5Q96PV4 448 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 BHMT2Q9H2M3 363 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 TYW1Q9NV66 732 aaKnown RBP12.42□□□□□ -0.42
SMAD4-211ENST00000590499 THEGQ9P2T0 379 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 MTMR6Q9Y217 621 aa12.42□□□□□ -0.42
SMAD4-211ENST00000590499 MYH11P35749 1972 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 VWA3AA6NCI4 1184 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 MEIS3P2A8K0S8 358 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 EYA4O95677 639 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 BMP15O95972 392 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 ITGB1P05556 798 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 SKIP12755 728 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 PTPAQ15257 358 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 PTPROQ16827 1216 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 TIGD5Q53EQ6 642 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 MAEAQ7L5Y9 396 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 MRPL10Q7Z7H8 261 aaKnown RBP12.41□□□□□ -0.42
SMAD4-211ENST00000590499 LRRC43Q8N309 656 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 KLHL23Q8NBE8 558 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 EHBP1Q8NDI1 1231 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 LMAN2LQ9H0V9 348 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 PLAGL2Q9UPG8 496 aa12.41□□□□□ -0.42
SMAD4-211ENST00000590499 E9PMD0 336 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 INO80B-WBP1J3KQ70 363 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 ERLIN2O94905 339 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 DNAJB1P25685 340 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 AXLP30530 894 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 GRIN1Q05586 938 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 COL19A1Q14993 1142 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 SF3A1Q15459 793 aaKnown RBP12.4□□□□□ -0.42
SMAD4-211ENST00000590499 TMEM119Q4V9L6 283 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 KCTD17Q8N5Z5 321 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 COLGALT1Q8NBJ5 622 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 RNF169Q8NCN4 708 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 SPPL3Q8TCT6 385 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 HELQQ8TDG4 1101 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 ATXN2LQ8WWM7 1075 aaKnown RBP12.4□□□□□ -0.42
SMAD4-211ENST00000590499 RSPH1Q8WYR4 309 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 LPPQ93052 612 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 CCDC51Q96ER9 411 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 AK8Q96MA6 479 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 RUSC1Q9BVN2 902 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 ALG13Q9NP73 1137 aaKnown RBP12.4□□□□□ -0.42
SMAD4-211ENST00000590499 DNM3Q9UQ16 869 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 PCDHB2Q9Y5E7 798 aa12.4□□□□□ -0.42
SMAD4-211ENST00000590499 BDP1A6H8Y1 2624 aa12.4□□□□□ -0.43
SMAD4-211ENST00000590499 C5orf42Q9H799 3197 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 LRRIQ4A6NIV6 560 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 B4GALT5O43286 388 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 SLC26A4O43511 780 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 STX6O43752 255 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 ARF4P18085 180 aaPredicted RBP12.39□□□□□ -0.43
SMAD4-211ENST00000590499 LAG3P18627 525 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 NCLP19338 710 aaKnown RBP12.39□□□□□ -0.43
SMAD4-211ENST00000590499 CTHP32929 405 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 NAMPTP43490 491 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 MAPK7Q13164 816 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 QPCTQ16769 361 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 FAM187BQ17R55 369 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 TUSC1Q2TAM9 212 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 LINC01559Q495D7 138 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 FAM173BQ6P4H8 233 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 NOTUMQ6P988 496 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 AGMOQ6ZNB7 445 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 C1orf186Q6ZWK4 172 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 HSCBQ8IWL3 235 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 ABI1Q8IZP0 508 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 DAW1Q8N136 415 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 SMG8Q8ND04 991 aaKnown RBP12.39□□□□□ -0.43
SMAD4-211ENST00000590499 LRRC15Q8TF66 581 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 BAP1Q92560 729 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 KIFAP3Q92845 792 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 PRIMPOLQ96LW4 560 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 EIF2AQ9BY44 585 aaKnown RBP12.39□□□□□ -0.43
SMAD4-211ENST00000590499 CCDC113Q9H0I3 377 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 FZD8Q9H461 694 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 NSUN3Q9H649 340 aaKnown RBP12.39□□□□□ -0.43
SMAD4-211ENST00000590499 PCDHB12Q9Y5F1 795 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 CLIC4Q9Y696 253 aa12.39□□□□□ -0.43
SMAD4-211ENST00000590499 MORC2Q9Y6X9 1032 aaPredicted RBP12.39□□□□□ -0.43
SMAD4-211ENST00000590499 CNTNAP2Q9UHC6 1331 aa12.38□□□□□ -0.43
SMAD4-211ENST00000590499 A0A1B0GUA9 196 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms