RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 CD207Q9UJ71 328 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 IRAK3Q9Y616 596 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 C19orf67A6NJJ6 358 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 PTGESO14684 152 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 N4BP3O15049 544 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 LILRB3O75022 631 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 PLA2G4BP0C869 781 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 CTSAP10619 480 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 LONP1P36776 959 aaKnown RBP16.72■□□□□ 0.27
CLIP3-202ENST00000585466 NDUFV1P49821 464 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 EFNA5P52803 228 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 PEX3P56589 373 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 ZP2Q05996 745 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 NCBP1Q09161 790 aaKnown RBP16.72■□□□□ 0.27
CLIP3-202ENST00000585466 SMC1AQ14683 1233 aaKnown RBP16.72■□□□□ 0.27
CLIP3-202ENST00000585466 ZRSR1Q15695 479 aaKnown RBP16.72■□□□□ 0.27
CLIP3-202ENST00000585466 NAB2Q15742 525 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 USP49Q70CQ1 688 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 TMC7Q7Z402 723 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 VPS52Q8N1B4 723 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 IFT74Q96LB3 600 aa16.72■□□□□ 0.27
CLIP3-202ENST00000585466 NTPCRQ9BSD7 190 aaKnown RBP16.72■□□□□ 0.27
CLIP3-202ENST00000585466 FBXO2Q9UK22 296 aaPredicted RBP16.72■□□□□ 0.27
CLIP3-202ENST00000585466 PHLPP2Q6ZVD8 1323 aa16.71■□□□□ 0.27
CLIP3-202ENST00000585466 NPHP3-ACAD11A0A0J9YXS1 232 aa16.71■□□□□ 0.27
CLIP3-202ENST00000585466 CARNS1A5YM72 827 aa16.71■□□□□ 0.27
CLIP3-202ENST00000585466 SFI1A8K8P3 1242 aa16.71■□□□□ 0.27
CLIP3-202ENST00000585466 CLASP2O75122 1294 aaKnown RBP16.71■□□□□ 0.27
CLIP3-202ENST00000585466 PTPN14Q15678 1187 aa16.71■□□□□ 0.27
CLIP3-202ENST00000585466 SYCE2Q6PIF2 218 aa16.71■□□□□ 0.27
CLIP3-202ENST00000585466 DRC1Q96MC2 740 aa16.71■□□□□ 0.27
CLIP3-202ENST00000585466 TIPINQ9BVW5 301 aa16.71■□□□□ 0.27
CLIP3-202ENST00000585466 TRIM6Q9C030 488 aaPredicted RBP16.71■□□□□ 0.27
CLIP3-202ENST00000585466 S1PR5Q9H228 398 aa16.71■□□□□ 0.27
CLIP3-202ENST00000585466 TMEM134Q9H6X4 195 aa16.71■□□□□ 0.27
CLIP3-202ENST00000585466 C17orf75Q9HAS0 396 aa16.71■□□□□ 0.27
CLIP3-202ENST00000585466 SNTG2Q9NY99 539 aa16.71■□□□□ 0.27
CLIP3-202ENST00000585466 KLK14Q9P0G3 267 aa16.71■□□□□ 0.27
CLIP3-202ENST00000585466 MORC2Q9Y6X9 1032 aaPredicted RBP16.71■□□□□ 0.27
CLIP3-202ENST00000585466 PLXNA3P51805 1871 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 MEFVO15553 781 aaPredicted RBP16.7■□□□□ 0.26
CLIP3-202ENST00000585466 STX6O43752 255 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 RECQL4O94761 1208 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 LIG1P18858 919 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 PLCG1P19174 1290 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 PROZP22891 400 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 RAD51AP2Q09MP3 1159 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 GRIK3Q13003 919 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 KARSQ15046 597 aaKnown RBP16.7■□□□□ 0.26
CLIP3-202ENST00000585466 ATF7IP2Q5U623 682 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 TAS1R1Q7RTX1 841 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 TMEM161BQ8NDZ6 487 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 SPIRE2Q8WWL2 714 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 SUSD6Q92537 303 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 KCNN1Q92952 543 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 USP28Q96RU2 1077 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 ACO2Q99798 780 aaKnown RBP16.7■□□□□ 0.26
CLIP3-202ENST00000585466 CCSER1Q9C0I3 900 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 KCND2Q9NZV8 630 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 CACNG4Q9UBN1 327 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 TNFSF13BQ9Y275 285 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 FAN1Q9Y2M0 1017 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 PRG3Q9Y2Y8 225 aaPredicted RBP16.7■□□□□ 0.26
CLIP3-202ENST00000585466 HCFC2Q9Y5Z7 792 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 VWA8A3KMH1 1905 aa16.7■□□□□ 0.26
CLIP3-202ENST00000585466 PDCD11Q14690 1871 aaKnown RBP16.69■□□□□ 0.26
CLIP3-202ENST00000585466 CITO14578 2027 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 FSD2A1L4K1 749 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 CCDC169A6NNP5 214 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 SLC16A4O15374 487 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 CXCL14O95715 111 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 ALDH2P05091 517 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 PLS3P13797 630 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 MARCKSP29966 332 aaPredicted RBP16.69■□□□□ 0.26
CLIP3-202ENST00000585466 CACNB1Q02641 598 aaPredicted RBP16.69■□□□□ 0.26
CLIP3-202ENST00000585466 DMP1Q13316 513 aaPredicted RBP16.69■□□□□ 0.26
CLIP3-202ENST00000585466 ANKRD54Q6NXT1 300 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 ADHFE1Q8IWW8 467 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 HACE1Q8IYU2 909 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 CEP120Q8N960 986 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 FEZF2Q8TBJ5 459 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 SLC22A17Q8WUG5 538 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 RAD54LQ92698 747 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 EPSTI1Q96J88 318 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 CLIC6Q96NY7 704 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 PAAF1Q9BRP4 392 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 CDT1Q9H211 546 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 KMT5AQ9NQR1 393 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 PRKAG3Q9UGI9 489 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 PARP2Q9UGN5 583 aa16.69■□□□□ 0.26
CLIP3-202ENST00000585466 USP15Q9Y4E8 981 aaPredicted RBP16.69■□□□□ 0.26
CLIP3-202ENST00000585466 SRPRBQ9Y5M8 271 aaKnown RBP16.69■□□□□ 0.26
CLIP3-202ENST00000585466 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.68■□□□□ 0.26
CLIP3-202ENST00000585466 K7ERI5 159 aa16.68■□□□□ 0.26
CLIP3-202ENST00000585466 BRD1O95696 1058 aa16.68■□□□□ 0.26
CLIP3-202ENST00000585466 SOD2P04179 222 aa16.68■□□□□ 0.26
CLIP3-202ENST00000585466 SSBP05455 408 aaKnown RBP eCLIP16.68■□□□□ 0.26
CLIP3-202ENST00000585466 MAPTP10636 758 aaKnown RBP16.68■□□□□ 0.26
CLIP3-202ENST00000585466 UBA7P41226 1012 aa16.68■□□□□ 0.26
CLIP3-202ENST00000585466 ZNF131P52739 623 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms