RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 ANKFY1Q9P2R3 1169 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 GDAQ9Y2T3 454 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 PRUNE2Q8WUY3 3088 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 ARL5CA6NH57 179 aa21.41■■□□□ 1.02
SS18-209ENST00000578595 DNAJB1P25685 340 aa21.41■■□□□ 1.02
SS18-209ENST00000578595 AFF1P51825 1210 aaKnown RBP21.41■■□□□ 1.02
SS18-209ENST00000578595 GIT2Q14161 759 aa21.41■■□□□ 1.02
SS18-209ENST00000578595 TPRNQ4KMQ1 711 aa21.41■■□□□ 1.02
SS18-209ENST00000578595 NT5DC1Q5TFE4 455 aa21.41■■□□□ 1.02
SS18-209ENST00000578595 PLPP4Q5VZY2 271 aa21.41■■□□□ 1.02
SS18-209ENST00000578595 SPIRE2Q8WWL2 714 aa21.41■■□□□ 1.02
SS18-209ENST00000578595 MRPS27Q92552 414 aaKnown RBP21.41■■□□□ 1.02
SS18-209ENST00000578595 HLA-CQ95604 372 aa21.41■■□□□ 1.02
SS18-209ENST00000578595 TARS2Q9BW92 718 aaKnown RBP21.41■■□□□ 1.02
SS18-209ENST00000578595 SNTG2Q9NY99 539 aa21.41■■□□□ 1.02
SS18-209ENST00000578595 DNAJB4Q9UDY4 337 aa21.41■■□□□ 1.02
SS18-209ENST00000578595 GIT1Q9Y2X7 761 aa21.41■■□□□ 1.02
SS18-209ENST00000578595 ATP6V1DQ9Y5K8 247 aa21.41■■□□□ 1.02
SS18-209ENST00000578595 IRS1P35568 1242 aa21.4■■□□□ 1.02
SS18-209ENST00000578595 KRT85P78386 507 aa21.4■■□□□ 1.02
SS18-209ENST00000578595 UBE3AQ05086 875 aa21.4■■□□□ 1.02
SS18-209ENST00000578595 ZNF280BQ86YH2 543 aa21.4■■□□□ 1.02
SS18-209ENST00000578595 FAM178BQ8IXR5 827 aa21.4■■□□□ 1.02
SS18-209ENST00000578595 SLC39A11Q8N1S5 342 aa21.4■■□□□ 1.02
SS18-209ENST00000578595 FAM13BQ9NYF5 915 aa21.4■■□□□ 1.02
SS18-209ENST00000578595 PRG3Q9Y2Y8 225 aaPredicted RBP21.4■■□□□ 1.02
SS18-209ENST00000578595 PCDHGC5Q9Y5F6 944 aa21.4■■□□□ 1.02
SS18-209ENST00000578595 PDCD11Q14690 1871 aaKnown RBP21.4■■□□□ 1.02
SS18-209ENST00000578595 A0A087X0B3 334 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 RECQL4O94761 1208 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 IDEP14735 1019 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 OR1G1P47890 313 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 SLC11A1P49279 550 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 OSTNP61366 133 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 TFF2Q03403 129 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 TAS1R3Q7RTX0 852 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 TMC7Q7Z402 723 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 HAUS6Q7Z4H7 955 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 RBM23Q86U06 439 aaKnown RBP21.39■■□□□ 1.01
SS18-209ENST00000578595 TMEM161BQ8NDZ6 487 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 DHX58Q96C10 678 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 SPATA32Q96LK8 384 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 ACO2Q99798 780 aaKnown RBP21.39■■□□□ 1.01
SS18-209ENST00000578595 TCF25Q9BQ70 676 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 CLDND1Q9NY35 253 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 COG5Q9UP83 839 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 TNFSF13BQ9Y275 285 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 REV3LO60673 3130 aa21.39■■□□□ 1.01
SS18-209ENST00000578595 CARNS1A5YM72 827 aa21.38■■□□□ 1.01
SS18-209ENST00000578595 TRAK2O60296 914 aa21.38■■□□□ 1.01
SS18-209ENST00000578595 NR1I2O75469 434 aa21.38■■□□□ 1.01
SS18-209ENST00000578595 DDHD2O94830 711 aa21.38■■□□□ 1.01
SS18-209ENST00000578595 MAPTP10636 758 aaKnown RBP21.38■■□□□ 1.01
SS18-209ENST00000578595 DDX12PQ92771 950 aa21.38■■□□□ 1.01
SS18-209ENST00000578595 CHAMP1Q96JM3 812 aa21.38■■□□□ 1.01
SS18-209ENST00000578595 CCDC94Q9BW85 323 aaPredicted RBP21.38■■□□□ 1.01
SS18-209ENST00000578595 PCDHA7Q9UN72 937 aa21.38■■□□□ 1.01
SS18-209ENST00000578595 FAN1Q9Y2M0 1017 aa21.38■■□□□ 1.01
SS18-209ENST00000578595 ZDHHC9Q9Y397 364 aa21.38■■□□□ 1.01
SS18-209ENST00000578595 MYMKA6NI61 221 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 B4GALT3O60512 393 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 GALTP07902 379 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 KCNA5P22460 613 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 LIG4P49917 911 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 YARSP54577 528 aaKnown RBP21.37■■□□□ 1.01
SS18-209ENST00000578595 NCKAP1LP55160 1127 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 ERVFC1P60507 584 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 MRPS5P82675 430 aaKnown RBP21.37■■□□□ 1.01
SS18-209ENST00000578595 PLCB3Q01970 1234 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 GRIK3Q13003 919 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 CAMK1Q14012 370 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 BMS1Q14692 1282 aaKnown RBP21.37■■□□□ 1.01
SS18-209ENST00000578595 AAK1Q2M2I8 961 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 SHC4Q6S5L8 630 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 MPZL3Q6UWV2 235 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 SFR1Q86XK3 245 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 TMEM87AQ8NBN3 555 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 STAMQ92783 540 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 NTPCRQ9BSD7 190 aaKnown RBP21.37■■□□□ 1.01
SS18-209ENST00000578595 CDT1Q9H211 546 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 UBE2ZQ9H832 354 aaPredicted RBP21.37■■□□□ 1.01
SS18-209ENST00000578595 LZTS1Q9Y250 596 aa21.37■■□□□ 1.01
SS18-209ENST00000578595 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.36■■□□□ 1.01
SS18-209ENST00000578595 HNRNPDLO14979 420 aaKnown RBP21.36■■□□□ 1.01
SS18-209ENST00000578595 ALDH2P05091 517 aa21.36■■□□□ 1.01
SS18-209ENST00000578595 NMT1P30419 496 aaKnown RBP21.36■■□□□ 1.01
SS18-209ENST00000578595 NRIP1P48552 1158 aa21.36■■□□□ 1.01
SS18-209ENST00000578595 ZNF131P52739 623 aa21.36■■□□□ 1.01
SS18-209ENST00000578595 ADGRD2Q7Z7M1 963 aa21.36■■□□□ 1.01
SS18-209ENST00000578595 TMEM173Q86WV6 379 aaPredicted RBP21.36■■□□□ 1.01
SS18-209ENST00000578595 CEP120Q8N960 986 aa21.36■■□□□ 1.01
SS18-209ENST00000578595 ATXN2LQ8WWM7 1075 aaKnown RBP21.36■■□□□ 1.01
SS18-209ENST00000578595 IGSF21Q96ID5 467 aa21.36■■□□□ 1.01
SS18-209ENST00000578595 TMEM175Q9BSA9 504 aa21.36■■□□□ 1.01
SS18-209ENST00000578595 TLE6Q9H808 572 aa21.36■■□□□ 1.01
SS18-209ENST00000578595 MIOSQ9NXC5 875 aa21.36■■□□□ 1.01
SS18-209ENST00000578595 TBC1D7Q9P0N9 293 aa21.36■■□□□ 1.01
SS18-209ENST00000578595 NRP1O14786 923 aa21.35■■□□□ 1.01
SS18-209ENST00000578595 GTF2F1P35269 517 aaKnown RBP eCLIP21.35■■□□□ 1.01
SS18-209ENST00000578595 HYAL1Q12794 435 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms