RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 REPS2Q8NFH8 660 aa7.1□□□□□ -1.27
NUP88-213ENST00000576862 MDGA1Q8NFP4 955 aa7.1□□□□□ -1.27
NUP88-213ENST00000576862 CEP95Q96GE4 821 aa7.1□□□□□ -1.27
NUP88-213ENST00000576862 TEKT5Q96M29 485 aa7.1□□□□□ -1.27
NUP88-213ENST00000576862 CDC5LQ99459 802 aaKnown RBP7.1□□□□□ -1.27
NUP88-213ENST00000576862 LSM14BQ9BX40 385 aaKnown RBP7.1□□□□□ -1.27
NUP88-213ENST00000576862 KRTAP9-3Q9BYQ3 159 aa7.1□□□□□ -1.27
NUP88-213ENST00000576862 TYW1Q9NV66 732 aaKnown RBP7.1□□□□□ -1.27
NUP88-213ENST00000576862 SIK3Q9Y2K2 1263 aa7.1□□□□□ -1.27
NUP88-213ENST00000576862 XPOTO43592 962 aaKnown RBP7.09□□□□□ -1.27
NUP88-213ENST00000576862 ACRV1P26436 265 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 SREBF1P36956 1147 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 SLC6A9P48067 706 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 RABGGTBP53611 331 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 APBA1Q02410 837 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 NOMO1Q15155 1222 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 Q6ZRM9 215 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 APBB1IPQ7Z5R6 666 aaPredicted RBP7.09□□□□□ -1.27
NUP88-213ENST00000576862 OR7D4Q8NG98 312 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 NRG4Q8WWG1 115 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 GPR20Q99678 358 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 BCO1Q9HAY6 547 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 ZBTB21Q9ULJ3 1066 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 DNM3Q9UQ16 869 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 SPEF1Q9Y4P9 236 aa7.09□□□□□ -1.27
NUP88-213ENST00000576862 KRTAP23-1A1A580 65 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 PDGFRBP09619 1106 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 ECHS1P30084 290 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 WASP42768 502 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 SCNN1GP51170 649 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 CSRP2Q16527 193 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 MFSD14BQ5SR56 506 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 ANKS6Q68DC2 871 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 FAM180AQ6UWF9 173 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 HTR3DQ70Z44 454 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 XYLT1Q86Y38 959 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.08□□□□□ -1.28
NUP88-213ENST00000576862 ST8SIA2Q92186 375 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 DPF2Q92785 391 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 EXTL1Q92935 676 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 PDCD2LQ9BRP1 358 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 CPEB1Q9BZB8 566 aaKnown RBP7.08□□□□□ -1.28
NUP88-213ENST00000576862 KCNH6Q9H252 994 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 MRFAP1Q9Y605 127 aa7.08□□□□□ -1.28
NUP88-213ENST00000576862 KLRG2A4D1S0 409 aaPredicted RBP7.07□□□□□ -1.28
NUP88-213ENST00000576862 MFAP3LO75121 409 aa7.07□□□□□ -1.28
NUP88-213ENST00000576862 GNAT2P19087 354 aa7.07□□□□□ -1.28
NUP88-213ENST00000576862 RRP1BQ14684 758 aaKnown RBP7.07□□□□□ -1.28
NUP88-213ENST00000576862 GJC2Q5T442 439 aaPredicted RBP7.07□□□□□ -1.28
NUP88-213ENST00000576862 DOK3Q7L591 496 aa7.07□□□□□ -1.28
NUP88-213ENST00000576862 GPRIN1Q7Z2K8 1008 aa7.07□□□□□ -1.28
NUP88-213ENST00000576862 SPRED1Q7Z699 444 aa7.07□□□□□ -1.28
NUP88-213ENST00000576862 PNMA8AQ86V59 439 aaPredicted RBP7.07□□□□□ -1.28
NUP88-213ENST00000576862 THEMISQ8N1K5 641 aaPredicted RBP7.07□□□□□ -1.28
NUP88-213ENST00000576862 PQLC1Q8N2U9 271 aa7.07□□□□□ -1.28
NUP88-213ENST00000576862 MB21D1Q8N884 522 aa7.07□□□□□ -1.28
NUP88-213ENST00000576862 FBXO18Q8NFZ0 1043 aa7.07□□□□□ -1.28
NUP88-213ENST00000576862 IL17DQ8TAD2 202 aa7.07□□□□□ -1.28
NUP88-213ENST00000576862 SH3RF3Q8TEJ3 882 aaPredicted RBP7.07□□□□□ -1.28
NUP88-213ENST00000576862 CPPED1Q9BRF8 314 aaPredicted RBP7.07□□□□□ -1.28
NUP88-213ENST00000576862 EPC1Q9H2F5 836 aa7.07□□□□□ -1.28
NUP88-213ENST00000576862 GIT1Q9Y2X7 761 aa7.07□□□□□ -1.28
NUP88-213ENST00000576862 ATRNL1Q5VV63 1379 aa7.07□□□□□ -1.28
NUP88-213ENST00000576862 CYP27B1O15528 508 aa7.06□□□□□ -1.28
NUP88-213ENST00000576862 IPO13O94829 963 aaKnown RBP7.06□□□□□ -1.28
NUP88-213ENST00000576862 ZRANB2O95218 330 aaKnown RBP eCLIP7.06□□□□□ -1.28
NUP88-213ENST00000576862 EDNRBP24530 442 aa7.06□□□□□ -1.28
NUP88-213ENST00000576862 GUCY1A2P33402 732 aa7.06□□□□□ -1.28
NUP88-213ENST00000576862 USP39Q53GS9 565 aaKnown RBP7.06□□□□□ -1.28
NUP88-213ENST00000576862 ZNF572Q7Z3I7 529 aaPredicted RBP7.06□□□□□ -1.28
NUP88-213ENST00000576862 FAM83AQ86UY5 434 aa7.06□□□□□ -1.28
NUP88-213ENST00000576862 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.06□□□□□ -1.28
NUP88-213ENST00000576862 OR52N2Q8NGI0 321 aa7.06□□□□□ -1.28
NUP88-213ENST00000576862 ATXN2LQ8WWM7 1075 aaKnown RBP7.06□□□□□ -1.28
NUP88-213ENST00000576862 KRTAP4-7Q9BYR0 210 aa7.06□□□□□ -1.28
NUP88-213ENST00000576862 SERPINB13Q9UIV8 391 aa7.06□□□□□ -1.28
NUP88-213ENST00000576862 INTUQ9ULD6 942 aa7.06□□□□□ -1.28
NUP88-213ENST00000576862 FAM171A2A8MVW0 826 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 ENDOD1O94919 500 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 INSRRP14616 1297 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 ALOX15P16050 662 aaPredicted RBP7.05□□□□□ -1.28
NUP88-213ENST00000576862 HK1P19367 917 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 PTPN7P35236 360 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 FLT3LGP49771 235 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 NEK2P51955 445 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 DCAF17Q5H9S7 520 aaPredicted RBP7.05□□□□□ -1.28
NUP88-213ENST00000576862 FAM47AQ5JRC9 791 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 EFCAB2Q5VUJ9 269 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 NAIF1Q69YI7 327 aaPredicted RBP7.05□□□□□ -1.28
NUP88-213ENST00000576862 PDZD4Q76G19 769 aaPredicted RBP7.05□□□□□ -1.28
NUP88-213ENST00000576862 GSPT2Q8IYD1 628 aaKnown RBP7.05□□□□□ -1.28
NUP88-213ENST00000576862 SLC35B2Q8TB61 432 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 COA7Q96BR5 231 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 CHMP4CQ96CF2 233 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 MNTQ99583 582 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 GPR87Q9BY21 358 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 LDAHQ9H6V9 325 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 LIMCH1Q9UPQ0 1083 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 IPPQ9Y573 584 aa7.05□□□□□ -1.28
NUP88-213ENST00000576862 XDHP47989 1333 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms