RNA–Protein interactions for RNA: ENST00000574408.5

USP43-205, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 3,425 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-205ENST00000574408 ZNF233A6NK53 670 aa11.31□□□□□ -0.6
USP43-205ENST00000574408 GJA5P36382 358 aa11.31□□□□□ -0.6
USP43-205ENST00000574408 ARL2P36404 184 aa11.31□□□□□ -0.6
USP43-205ENST00000574408 NAMPTP43490 491 aa11.31□□□□□ -0.6
USP43-205ENST00000574408 RNASE9P60153 205 aaKnown RBP11.31□□□□□ -0.6
USP43-205ENST00000574408 ITIH3Q06033 890 aa11.31□□□□□ -0.6
USP43-205ENST00000574408 GPAT2Q6NUI2 795 aa11.31□□□□□ -0.6
USP43-205ENST00000574408 SV2AQ7L0J3 742 aa11.31□□□□□ -0.6
USP43-205ENST00000574408 ZNF572Q7Z3I7 529 aaPredicted RBP11.31□□□□□ -0.6
USP43-205ENST00000574408 TRIM50Q86XT4 487 aa11.31□□□□□ -0.6
USP43-205ENST00000574408 FBXO16Q8IX29 292 aaPredicted RBP11.31□□□□□ -0.6
USP43-205ENST00000574408 MMGT1Q8N4V1 131 aa11.31□□□□□ -0.6
USP43-205ENST00000574408 LRRC57Q8N9N7 239 aa11.31□□□□□ -0.6
USP43-205ENST00000574408 FBXL13Q8NEE6 735 aa11.31□□□□□ -0.6
USP43-205ENST00000574408 VTI1AQ96AJ9 217 aa11.31□□□□□ -0.6
USP43-205ENST00000574408 TARSL2A2RTX5 802 aaKnown RBP11.3□□□□□ -0.6
USP43-205ENST00000574408 K7ERI5 159 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 NOP56O00567 594 aaKnown RBP11.3□□□□□ -0.6
USP43-205ENST00000574408 SOCS7O14512 581 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 KCNK3O14649 394 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 CYP2C8P10632 490 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 COPB2P35606 906 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 LMBRD2Q68DH5 695 aaPredicted RBP11.3□□□□□ -0.6
USP43-205ENST00000574408 NT5C1BQ96P26 610 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 CEP89Q96ST8 783 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 TAF1DQ9H5J8 278 aaPredicted RBP11.3□□□□□ -0.6
USP43-205ENST00000574408 ATP8B3O60423 1300 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 A0A0A6YYK5 440 aaPredicted RBP11.3□□□□□ -0.6
USP43-205ENST00000574408 KIF4AO95239 1232 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 ABCD1P33897 745 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 RFC5P40937 340 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 SNAPC2Q13487 334 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 TAF3Q5VWG9 929 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 PEX26Q7Z412 305 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 GPATCH11Q8N954 259 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 ZBTB45Q96K62 511 aaPredicted RBP11.3□□□□□ -0.6
USP43-205ENST00000574408 TARS2Q9BW92 718 aaKnown RBP11.3□□□□□ -0.6
USP43-205ENST00000574408 OSGEPQ9NPF4 335 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 RBM12Q9NTZ6 932 aaKnown RBP11.3□□□□□ -0.6
USP43-205ENST00000574408 RAB20Q9NX57 234 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 ANKFY1Q9P2R3 1169 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 L1RE1Q9UN81 338 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 CLEC11AQ9Y240 323 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 COQ4Q9Y3A0 265 aa11.3□□□□□ -0.6
USP43-205ENST00000574408 EXTL3O43909 919 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 TMEM253P0C7T8 217 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 MCM3P25205 808 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 ACOT2P49753 483 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 GPC3P51654 580 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 MFAP3P55082 362 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 NLRP11P59045 1033 aaKnown RBP11.29□□□□□ -0.6
USP43-205ENST00000574408 ERVK-9P63128 1117 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 DRP2Q13474 957 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 TARBP2Q15633 366 aaKnown RBP11.29□□□□□ -0.6
USP43-205ENST00000574408 HSDL1Q3SXM5 330 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 DAAM2Q86T65 1068 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 RPUSD2Q8IZ73 545 aaKnown RBP11.29□□□□□ -0.6
USP43-205ENST00000574408 LMBR1Q8WVP7 490 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 RFFLQ8WZ73 363 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 SLC10A4Q96EP9 437 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 LRRC1Q9BTT6 524 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 ACP6Q9NPH0 428 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 RNF14Q9UBS8 474 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 AGO2Q9UKV8 859 aaKnown RBP11.29□□□□□ -0.6
USP43-205ENST00000574408 GLTPD2A6NH11 291 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 CYP26A1O43174 497 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 SGPL1O95470 568 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 HDXQ7Z353 690 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 SLC35G2Q8TBE7 412 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 AFAP1L1Q8TED9 768 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 ARHGEF26Q96DR7 871 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 FNBP1Q96RU3 617 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 PI4K2AQ9BTU6 479 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 EFCC1Q9HA90 598 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 NCANO14594 1321 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 DNAJC25-GNG10A0A024R161 153 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 HARSP12081 509 aaKnown RBP11.29□□□□□ -0.6
USP43-205ENST00000574408 TNNI1P19237 187 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 GTF2H1P32780 548 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 MCCD1P59942 119 aaPredicted RBP11.29□□□□□ -0.6
USP43-205ENST00000574408 CAPSQ13938 189 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 GSPT2Q8IYD1 628 aaKnown RBP11.29□□□□□ -0.6
USP43-205ENST00000574408 FAM71AQ8IYT1 594 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 HELQQ8TDG4 1101 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 HDAC7Q8WUI4 952 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 SHC3Q92529 594 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 COPS5Q92905 334 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 FAM167AQ96KS9 214 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 GPR20Q99678 358 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 THAP2Q9H0W7 228 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 MROH8Q9H579 483 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 TMEM51Q9NW97 253 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 MCM3APO60318 1980 aa11.29□□□□□ -0.6
USP43-205ENST00000574408 SLC7A5Q01650 507 aa11.28□□□□□ -0.6
USP43-205ENST00000574408 MKRN3Q13064 507 aaKnown RBP11.28□□□□□ -0.6
USP43-205ENST00000574408 GPR162Q16538 588 aa11.28□□□□□ -0.6
USP43-205ENST00000574408 CELF3Q5SZQ8 465 aaKnown RBP11.28□□□□□ -0.6
USP43-205ENST00000574408 LDLRAD1Q5T700 205 aa11.28□□□□□ -0.6
USP43-205ENST00000574408 NOP9Q86U38 636 aaKnown RBP11.28□□□□□ -0.6
USP43-205ENST00000574408 EPS8L1Q8TE68 723 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms