RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ZBTB33Q86T24 672 aa14.9□□□□□ -0.02
CCDC40-209ENST00000573474 USP37Q86T82 979 aa14.9□□□□□ -0.02
CCDC40-209ENST00000573474 TMC2Q8TDI7 906 aa14.9□□□□□ -0.02
CCDC40-209ENST00000573474 OSMRQ99650 979 aa14.9□□□□□ -0.02
CCDC40-209ENST00000573474 NUP58Q9BVL2 599 aa14.9□□□□□ -0.02
CCDC40-209ENST00000573474 CELF4Q9BZC1 486 aaKnown RBP14.9□□□□□ -0.02
CCDC40-209ENST00000573474 STARD7Q9NQZ5 370 aa14.9□□□□□ -0.02
CCDC40-209ENST00000573474 ARVCFO00192 962 aa14.89□□□□□ -0.03
CCDC40-209ENST00000573474 OGTO15294 1046 aa14.89□□□□□ -0.03
CCDC40-209ENST00000573474 STX10O60499 249 aa14.89□□□□□ -0.03
CCDC40-209ENST00000573474 TSPAN1O60635 241 aa14.89□□□□□ -0.03
CCDC40-209ENST00000573474 TPM1P09493 284 aa14.89□□□□□ -0.03
CCDC40-209ENST00000573474 HSPA1AP0DMV8 641 aaKnown RBP14.89□□□□□ -0.03
CCDC40-209ENST00000573474 HSPA1BP0DMV9 641 aaKnown RBP14.89□□□□□ -0.03
CCDC40-209ENST00000573474 ARF4P18085 180 aaPredicted RBP14.89□□□□□ -0.03
CCDC40-209ENST00000573474 SFPQP23246 707 aaKnown RBP eCLIP14.89□□□□□ -0.03
CCDC40-209ENST00000573474 SNX17Q15036 470 aa14.89□□□□□ -0.03
CCDC40-209ENST00000573474 ZNF568Q3ZCX4 644 aa14.89□□□□□ -0.03
CCDC40-209ENST00000573474 CRELD2Q6UXH1 353 aaPredicted RBP14.89□□□□□ -0.03
CCDC40-209ENST00000573474 CATSPER4Q7RTX7 472 aa14.89□□□□□ -0.03
CCDC40-209ENST00000573474 IQCDQ96DY2 449 aa14.89□□□□□ -0.03
CCDC40-209ENST00000573474 PCMTD1Q96MG8 357 aaPredicted RBP14.89□□□□□ -0.03
CCDC40-209ENST00000573474 NOD1Q9Y239 953 aa14.89□□□□□ -0.03
CCDC40-209ENST00000573474 SIK3Q9Y2K2 1263 aa14.89□□□□□ -0.03
CCDC40-209ENST00000573474 TRPV2Q9Y5S1 764 aa14.89□□□□□ -0.03
CCDC40-209ENST00000573474 A0A1B0GUA9 196 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 GTPBP10A4D1E9 387 aaKnown RBP14.88□□□□□ -0.03
CCDC40-209ENST00000573474 N4BP1O75113 896 aaKnown RBP14.88□□□□□ -0.03
CCDC40-209ENST00000573474 TRIM49P0CI25 452 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 TRIM49CP0CI26 452 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 MCF2P10911 925 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 HARSP12081 509 aaKnown RBP14.88□□□□□ -0.03
CCDC40-209ENST00000573474 AXLP30530 894 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 FMO5P49326 533 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 ACOT2P49753 483 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 PSMD6Q15008 389 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 KYAT1Q16773 422 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 EEF1DP3Q658K8 133 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 APBB1IPQ7Z5R6 666 aaPredicted RBP14.88□□□□□ -0.03
CCDC40-209ENST00000573474 CCDC150Q8NCX0 1101 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 PARD3BQ8TEW8 1205 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 ARMC5Q96C12 935 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 CPB2Q96IY4 423 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 ZNF333Q96JL9 665 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 PDZD7Q9H5P4 517 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 TRMT13Q9NUP7 481 aaKnown RBP14.88□□□□□ -0.03
CCDC40-209ENST00000573474 CDY2AQ9Y6F7 541 aa14.88□□□□□ -0.03
CCDC40-209ENST00000573474 TRIP12Q14669 1992 aaPredicted RBP14.87□□□□□ -0.03
CCDC40-209ENST00000573474 FRMPD3Q5JV73 1810 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 AKR1B15C9JRZ8 316 aaPredicted RBP14.87□□□□□ -0.03
CCDC40-209ENST00000573474 PMM2O15305 246 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 P4HA2O15460 535 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 FAM189A1O60320 539 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 CAND2O75155 1236 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 FGFR4P22455 802 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 HOXA11P31270 313 aaPredicted RBP14.87□□□□□ -0.03
CCDC40-209ENST00000573474 GTF2H1P32780 548 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 THPOP40225 353 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 DLG4P78352 724 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 RBL2Q08999 1139 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 KCNMA1Q12791 1236 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 FIGNQ5HY92 759 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 C1orf220Q5T0J3 134 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 GBP6Q6ZN66 633 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 CCDC155Q8N6L0 562 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 PLEKHO2Q8TD55 490 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 WNT8BQ93098 351 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 CCDC127Q96BQ5 260 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 ADPGKQ9BRR6 497 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 CRISPLD2Q9H0B8 497 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 CDT1Q9H211 546 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 MMRN2Q9H8L6 949 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 RBAKQ9NYW8 714 aaPredicted RBP14.87□□□□□ -0.03
CCDC40-209ENST00000573474 HTTP42858 3142 aa14.87□□□□□ -0.03
CCDC40-209ENST00000573474 LRRIQ3A6PVS8 624 aaPredicted RBP14.86□□□□□ -0.03
CCDC40-209ENST00000573474 SGPL1O95470 568 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 CHRNA1P02708 482 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 TFRCP02786 760 aaKnown RBP14.86□□□□□ -0.03
CCDC40-209ENST00000573474 GYPCP04921 128 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 TRIM21P19474 475 aaKnown RBP14.86□□□□□ -0.03
CCDC40-209ENST00000573474 KLK7P49862 253 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 CDK7P50613 346 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 MYL7Q01449 175 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 POU5F1Q01860 360 aaKnown RBP14.86□□□□□ -0.03
CCDC40-209ENST00000573474 PPP3CAQ08209 521 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 MGAT3Q09327 533 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 CETN1Q12798 172 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 SURF1Q15526 300 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 EXOC3L4Q17RC7 722 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 TRIM71Q2Q1W2 868 aaKnown RBP14.86□□□□□ -0.03
CCDC40-209ENST00000573474 DCAF4L1Q3SXM0 396 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 FAM26DQ5JW98 314 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 ZBTB41Q5SVQ8 909 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 NOTUMQ6P988 496 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 CDR2LQ86X02 465 aaPredicted RBP14.86□□□□□ -0.03
CCDC40-209ENST00000573474 BRSK2Q8IWQ3 736 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 LRRC8AQ8IWT6 810 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 NEK11Q8NG66 645 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 CPLX3Q8WVH0 158 aa14.86□□□□□ -0.03
CCDC40-209ENST00000573474 TMEM40Q8WWA1 233 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms