RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 APBB1IPQ7Z5R6 666 aaPredicted RBP8.95□□□□□ -0.98
VPS53-214ENST00000572607 ALYREFQ86V81 257 aaKnown RBP8.95□□□□□ -0.98
VPS53-214ENST00000572607 SPPL3Q8TCT6 385 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 LPPQ93052 612 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 CALML4Q96GE6 196 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 TMEM169Q96HH4 297 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 PRIMPOLQ96LW4 560 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 AK8Q96MA6 479 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 FAM193BQ96PV7 902 aaPredicted RBP8.95□□□□□ -0.98
VPS53-214ENST00000572607 CSRNP2Q9H175 543 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 CWH43Q9H720 699 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 ENTPD7Q9NQZ7 604 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 TLR9Q9NR96 1032 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 RNF19AQ9NV58 838 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 CLDND1Q9NY35 253 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 KANSL3Q9P2N6 904 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 FAM50BQ9Y247 325 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 HCN4Q9Y3Q4 1203 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 PHLPP2Q6ZVD8 1323 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 EVPLQ92817 2033 aa8.95□□□□□ -0.98
VPS53-214ENST00000572607 RALGAPA2Q2PPJ7 1873 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 PP2D1A8MPX8 630 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 E9PMD0 336 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 SLC26A4O43511 780 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 ZC3H11AO75152 810 aaKnown RBP eCLIP8.94□□□□□ -0.98
VPS53-214ENST00000572607 NR1I2O75469 434 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 SRGAP2BP0DMP2 458 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 ATF7P17544 494 aaPredicted RBP8.94□□□□□ -0.98
VPS53-214ENST00000572607 LIG1P18858 919 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 NCLP19338 710 aaKnown RBP8.94□□□□□ -0.98
VPS53-214ENST00000572607 CDC25AP30304 524 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 CA8P35219 290 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 BCAR1P56945 870 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 PLCB3Q01970 1234 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 DMP1Q13316 513 aaPredicted RBP8.94□□□□□ -0.98
VPS53-214ENST00000572607 PRPF4BQ13523 1007 aaKnown RBP8.94□□□□□ -0.98
VPS53-214ENST00000572607 SF3A1Q15459 793 aaKnown RBP8.94□□□□□ -0.98
VPS53-214ENST00000572607 IL17AQ16552 155 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 ECM1Q16610 540 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 MAPK6Q16659 721 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 PUS10Q3MIT2 529 aaKnown RBP8.94□□□□□ -0.98
VPS53-214ENST00000572607 CDCA2Q69YH5 1023 aaPredicted RBP8.94□□□□□ -0.98
VPS53-214ENST00000572607 SLC27A1Q6PCB7 646 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 LRRC55Q6ZSA7 311 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 TRIM67Q6ZTA4 783 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 MRPL10Q7Z7H8 261 aaKnown RBP8.94□□□□□ -0.98
VPS53-214ENST00000572607 CABP7Q86V35 215 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 FAM178BQ8IXR5 827 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 TMEM87AQ8NBN3 555 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.94□□□□□ -0.98
VPS53-214ENST00000572607 MRPS27Q92552 414 aaKnown RBP8.94□□□□□ -0.98
VPS53-214ENST00000572607 SNX21Q969T3 373 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 PABPC5Q96DU9 382 aaKnown RBP8.94□□□□□ -0.98
VPS53-214ENST00000572607 CPB2Q96IY4 423 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 DRC1Q96MC2 740 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 ADPGKQ9BRR6 497 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 TIPINQ9BVW5 301 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 GBP3Q9H0R5 595 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 IGFLR1Q9H665 355 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 NGRNQ9NPE2 291 aaKnown RBP8.94□□□□□ -0.98
VPS53-214ENST00000572607 SPG21Q9NZD8 308 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 DAXXQ9UER7 740 aaPredicted RBP8.94□□□□□ -0.98
VPS53-214ENST00000572607 STK39Q9UEW8 545 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 KCNG1Q9UIX4 513 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 LZTS1Q9Y250 596 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 IPPQ9Y573 584 aa8.94□□□□□ -0.98
VPS53-214ENST00000572607 CCDC169A6NNP5 214 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 N4BP3O15049 544 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 OFD1O75665 1012 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 NPTXRO95502 500 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 PRKCBP05771 671 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 PDIA4P13667 645 aaKnown RBP8.93□□□□□ -0.98
VPS53-214ENST00000572607 ARF4P18085 180 aaPredicted RBP8.93□□□□□ -0.98
VPS53-214ENST00000572607 SYT1P21579 422 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 HOXA11P31270 313 aaPredicted RBP8.93□□□□□ -0.98
VPS53-214ENST00000572607 IRS1P35568 1242 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 LONP1P36776 959 aaKnown RBP8.93□□□□□ -0.98
VPS53-214ENST00000572607 TXLNAP40222 546 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 NDUFV1P49821 464 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 EFNA5P52803 228 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 HYAL1Q12794 435 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 AMHR2Q16671 573 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 LEXMQ3ZCV2 418 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 UBXN11Q5T124 520 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 PLPP4Q5VZY2 271 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 TMC7Q7Z402 723 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 SLC39A11Q8N1S5 342 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 RPS6KC1Q96S38 1066 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 CDCA3Q99618 268 aaPredicted RBP8.93□□□□□ -0.98
VPS53-214ENST00000572607 TCF25Q9BQ70 676 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 TMEM175Q9BSA9 504 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 APOL6Q9BWW8 343 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 EIF2AQ9BY44 585 aaKnown RBP8.93□□□□□ -0.98
VPS53-214ENST00000572607 ZSCAN16Q9H4T2 348 aaPredicted RBP8.93□□□□□ -0.98
VPS53-214ENST00000572607 TLE6Q9H808 572 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 TBC1D13Q9NVG8 400 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 KCND2Q9NZV8 630 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 GIT1Q9Y2X7 761 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 WDR81Q562E7 1941 aa8.93□□□□□ -0.98
VPS53-214ENST00000572607 TECTAO75443 2155 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms