RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 OR6B1O95007 311 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 DPYDQ12882 1025 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 ZBTB17Q13105 803 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 SEPT6Q14141 434 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 PLS1Q14651 629 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 KPNB1Q14974 876 aaKnown RBP11.57□□□□□ -0.56
CLK3-226ENST00000569406 TRADDQ15628 312 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 IFIT1BQ5T764 474 aaKnown RBP11.57□□□□□ -0.56
CLK3-226ENST00000569406 C12orf60Q5U649 245 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 HS2ST1Q7LGA3 356 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 SH3RF3Q8TEJ3 882 aaPredicted RBP11.57□□□□□ -0.56
CLK3-226ENST00000569406 IQCDQ96DY2 449 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 FAIMQ9NVQ4 179 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 QSER1Q2KHR3 1735 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 NRXN2Q9P2S2 1712 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 TBKBP1A7MCY6 615 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 ASAP2O43150 1006 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 GYPCP04921 128 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 CYP2C9P11712 490 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 CHN1P15882 459 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 GM2AP17900 193 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 EIF2B5Q13144 721 aaKnown RBP11.57□□□□□ -0.56
CLK3-226ENST00000569406 BIRC3Q13489 604 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 PPP2R5BQ15173 497 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 BCL2A1Q16548 175 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 ERMARDQ5T6L9 678 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 MARK2Q7KZI7 788 aaKnown RBP11.57□□□□□ -0.56
CLK3-226ENST00000569406 ST13P4Q8IZP2 240 aaPredicted RBP11.57□□□□□ -0.56
CLK3-226ENST00000569406 GOLM1Q8NBJ4 401 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 LRRC15Q8TF66 581 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 GATA6Q92908 595 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 DYNLL2Q96FJ2 89 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 DACH1Q9UI36 760 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 TSKSQ9UJT2 592 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 RASA4BC9J798 803 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 RASA4O43374 803 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 DDAH1O94760 285 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 CYP1A2P05177 515 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 PRKACBP22694 351 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 PLCD1P51178 756 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 BNIP1Q12981 228 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 C15orf52Q6ZUT6 534 aaKnown RBP11.57□□□□□ -0.56
CLK3-226ENST00000569406 CATIPQ7Z7H3 387 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 ANKS1AQ92625 1134 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 SNX25Q9H3E2 840 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 PARVBQ9HBI1 364 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 GPBP1L1Q9HC44 474 aaPredicted RBP11.57□□□□□ -0.56
CLK3-226ENST00000569406 SAP30BPQ9UHR5 308 aaKnown RBP11.57□□□□□ -0.56
CLK3-226ENST00000569406 XPOTO43592 962 aaKnown RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 ZNF844Q08AG5 666 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 CTC1Q2NKJ3 1217 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 TPTE2Q6XPS3 522 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 PIGWQ7Z7B1 504 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 CREG2Q8IUH2 290 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.56□□□□□ -0.56
CLK3-226ENST00000569406 DTX3LQ8TDB6 740 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 FNBP1Q96RU3 617 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 RTFDC1Q9BY42 306 aaPredicted RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 CCDC113Q9H0I3 377 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 RBM12Q9NTZ6 932 aaKnown RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 ABHD10Q9NUJ1 306 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 QPCTLQ9NXS2 382 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 KIAA1257Q9ULG3 409 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 TOM1O60784 492 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 PAEPP09466 180 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 CDK4P11802 303 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 SERPINB8P50452 374 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 PRR5LQ6MZQ0 368 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 VASH1Q7L8A9 365 aaPredicted RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 VPS36Q86VN1 386 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 LSM14AQ8ND56 463 aaKnown RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 CERKQ8TCT0 537 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 FBXO41Q8TF61 875 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 VMP1Q96GC9 406 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 CGREF1Q99674 301 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 PRMT1Q99873 361 aaKnown RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 FHDC1Q9C0D6 1143 aaPredicted RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 ANKRD2Q9GZV1 360 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.56□□□□□ -0.56
CLK3-226ENST00000569406 MAD2L2Q9UI95 211 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 DSEQ9UL01 958 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 RTCBQ9Y3I0 505 aaKnown RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 DUSP10Q9Y6W6 482 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 TTI1O43156 1089 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 DGKIO75912 1065 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 HSD17B3P37058 310 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 RNASE9P60153 205 aaKnown RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 GRAPQ13588 217 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 NR1D2Q14995 579 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 ANKDD1AQ495B1 522 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 CERKLQ49MI3 558 aaPredicted RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 LRRC49Q8IUZ0 686 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 SMYD4Q8IYR2 804 aaPredicted RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 SLC44A5Q8NCS7 719 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 GRAPLQ8TC17 118 aaPredicted RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 FNDC8Q8TC99 324 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 PPP1R10Q96QC0 940 aaKnown RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 PRPF18Q99633 342 aaKnown RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 MTFR1LQ9H019 292 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 VPS16Q9H269 839 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms