RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 ADPGKQ9BRR6 497 aa22.37■■□□□ 1.17
CLK3-225ENST00000569063 TMEM134Q9H6X4 195 aa22.37■■□□□ 1.17
CLK3-225ENST00000569063 CD320Q9NPF0 282 aa22.37■■□□□ 1.17
CLK3-225ENST00000569063 KCND2Q9NZV8 630 aa22.37■■□□□ 1.17
CLK3-225ENST00000569063 CCDC169A6NNP5 214 aa22.36■■□□□ 1.17
CLK3-225ENST00000569063 SRGAP2BP0DMP2 458 aa22.36■■□□□ 1.17
CLK3-225ENST00000569063 LIG1P18858 919 aa22.36■■□□□ 1.17
CLK3-225ENST00000569063 UBA7P41226 1012 aa22.36■■□□□ 1.17
CLK3-225ENST00000569063 RESTQ13127 1097 aa22.36■■□□□ 1.17
CLK3-225ENST00000569063 DMP1Q13316 513 aaPredicted RBP22.36■■□□□ 1.17
CLK3-225ENST00000569063 TMEM132AQ24JP5 1023 aa22.36■■□□□ 1.17
CLK3-225ENST00000569063 NT5DC1Q5TFE4 455 aa22.36■■□□□ 1.17
CLK3-225ENST00000569063 GJD3Q8N144 294 aa22.36■■□□□ 1.17
CLK3-225ENST00000569063 NTPCRQ9BSD7 190 aaKnown RBP22.36■■□□□ 1.17
CLK3-225ENST00000569063 VN1R3Q9BXE9 311 aa22.36■■□□□ 1.17
CLK3-225ENST00000569063 ARHGAP28Q9P2N2 729 aa22.36■■□□□ 1.17
CLK3-225ENST00000569063 PARP2Q9UGN5 583 aa22.36■■□□□ 1.17
CLK3-225ENST00000569063 USP20Q9Y2K6 914 aa22.36■■□□□ 1.17
CLK3-225ENST00000569063 RBM19Q9Y4C8 960 aaKnown RBP22.36■■□□□ 1.17
CLK3-225ENST00000569063 PHLPP2Q6ZVD8 1323 aa22.35■■□□□ 1.17
CLK3-225ENST00000569063 PLA2G4BP0C869 781 aa22.35■■□□□ 1.17
CLK3-225ENST00000569063 GRIN1Q05586 938 aa22.35■■□□□ 1.17
CLK3-225ENST00000569063 ZP2Q05996 745 aa22.35■■□□□ 1.17
CLK3-225ENST00000569063 ADHFE1Q8IWW8 467 aa22.35■■□□□ 1.17
CLK3-225ENST00000569063 CALML4Q96GE6 196 aa22.35■■□□□ 1.17
CLK3-225ENST00000569063 KMT5AQ9NQR1 393 aa22.35■■□□□ 1.17
CLK3-225ENST00000569063 KLK14Q9P0G3 267 aa22.35■■□□□ 1.17
CLK3-225ENST00000569063 KCNG1Q9UIX4 513 aa22.35■■□□□ 1.17
CLK3-225ENST00000569063 CLIC4Q9Y696 253 aa22.35■■□□□ 1.17
CLK3-225ENST00000569063 SSBP05455 408 aaKnown RBP eCLIP22.34■■□□□ 1.17
CLK3-225ENST00000569063 OR1G1P47890 313 aa22.34■■□□□ 1.17
CLK3-225ENST00000569063 GRIK3Q13003 919 aa22.34■■□□□ 1.17
CLK3-225ENST00000569063 PTPAQ15257 358 aa22.34■■□□□ 1.17
CLK3-225ENST00000569063 DCAF4L1Q3SXM0 396 aa22.34■■□□□ 1.17
CLK3-225ENST00000569063 ATF7IP2Q5U623 682 aa22.34■■□□□ 1.17
CLK3-225ENST00000569063 EEF1DP3Q658K8 133 aa22.34■■□□□ 1.17
CLK3-225ENST00000569063 FOXD4L1Q9NU39 408 aa22.34■■□□□ 1.17
CLK3-225ENST00000569063 MARCH5Q9NX47 278 aa22.34■■□□□ 1.17
CLK3-225ENST00000569063 SNTG2Q9NY99 539 aa22.34■■□□□ 1.17
CLK3-225ENST00000569063 MTMR6Q9Y217 621 aa22.34■■□□□ 1.17
CLK3-225ENST00000569063 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.33■■□□□ 1.17
CLK3-225ENST00000569063 C19orf67A6NJJ6 358 aa22.33■■□□□ 1.17
CLK3-225ENST00000569063 SFI1A8K8P3 1242 aa22.33■■□□□ 1.17
CLK3-225ENST00000569063 CLASP2O75122 1294 aaKnown RBP22.33■■□□□ 1.17
CLK3-225ENST00000569063 NR1I2O75469 434 aa22.33■■□□□ 1.17
CLK3-225ENST00000569063 EFEMP2O95967 443 aa22.33■■□□□ 1.17
CLK3-225ENST00000569063 ANKRD54Q6NXT1 300 aa22.33■■□□□ 1.17
CLK3-225ENST00000569063 SPIRE2Q8WWL2 714 aa22.33■■□□□ 1.17
CLK3-225ENST00000569063 AUTS2Q8WXX7 1259 aa22.33■■□□□ 1.17
CLK3-225ENST00000569063 CASP10Q92851 521 aa22.33■■□□□ 1.17
CLK3-225ENST00000569063 RPS6KC1Q96S38 1066 aa22.33■■□□□ 1.17
CLK3-225ENST00000569063 TNFSF13BQ9Y275 285 aa22.33■■□□□ 1.17
CLK3-225ENST00000569063 PRG3Q9Y2Y8 225 aaPredicted RBP22.33■■□□□ 1.17
CLK3-225ENST00000569063 HCFC2Q9Y5Z7 792 aa22.33■■□□□ 1.17
CLK3-225ENST00000569063 STX6O43752 255 aa22.32■■□□□ 1.16
CLK3-225ENST00000569063 PLS3P13797 630 aa22.32■■□□□ 1.16
CLK3-225ENST00000569063 HOXB8P17481 243 aaPredicted RBP22.32■■□□□ 1.16
CLK3-225ENST00000569063 CA8P35219 290 aa22.32■■□□□ 1.16
CLK3-225ENST00000569063 RAD51AP2Q09MP3 1159 aa22.32■■□□□ 1.16
CLK3-225ENST00000569063 PTPN14Q15678 1187 aa22.32■■□□□ 1.16
CLK3-225ENST00000569063 ARSHQ5FYA8 562 aa22.32■■□□□ 1.16
CLK3-225ENST00000569063 LLGL2Q6P1M3 1020 aa22.32■■□□□ 1.16
CLK3-225ENST00000569063 TAS1R3Q7RTX0 852 aa22.32■■□□□ 1.16
CLK3-225ENST00000569063 APBB1IPQ7Z5R6 666 aaPredicted RBP22.32■■□□□ 1.16
CLK3-225ENST00000569063 RNF168Q8IYW5 571 aaPredicted RBP22.32■■□□□ 1.16
CLK3-225ENST00000569063 ACO2Q99798 780 aaKnown RBP22.32■■□□□ 1.16
CLK3-225ENST00000569063 COLEC11Q9BWP8 271 aa22.32■■□□□ 1.16
CLK3-225ENST00000569063 CCSER1Q9C0I3 900 aa22.32■■□□□ 1.16
CLK3-225ENST00000569063 S1PR5Q9H228 398 aa22.32■■□□□ 1.16
CLK3-225ENST00000569063 ZSCAN16Q9H4T2 348 aaPredicted RBP22.32■■□□□ 1.16
CLK3-225ENST00000569063 PTPRHQ9HD43 1115 aa22.32■■□□□ 1.16
CLK3-225ENST00000569063 SLC16A4O15374 487 aa22.31■■□□□ 1.16
CLK3-225ENST00000569063 LILRB3O75022 631 aa22.31■■□□□ 1.16
CLK3-225ENST00000569063 RECQL4O94761 1208 aa22.31■■□□□ 1.16
CLK3-225ENST00000569063 SOD2P04179 222 aa22.31■■□□□ 1.16
CLK3-225ENST00000569063 SSTR3P32745 418 aaPredicted RBP22.31■■□□□ 1.16
CLK3-225ENST00000569063 KARSQ15046 597 aaKnown RBP22.31■■□□□ 1.16
CLK3-225ENST00000569063 FAM173BQ6P4H8 233 aa22.31■■□□□ 1.16
CLK3-225ENST00000569063 SYCE2Q6PIF2 218 aa22.31■■□□□ 1.16
CLK3-225ENST00000569063 LRRC15Q8TF66 581 aa22.31■■□□□ 1.16
CLK3-225ENST00000569063 SUSD6Q92537 303 aa22.31■■□□□ 1.16
CLK3-225ENST00000569063 POP1Q99575 1024 aaKnown RBP22.31■■□□□ 1.16
CLK3-225ENST00000569063 MRPL4Q9BYD3 311 aaKnown RBP22.31■■□□□ 1.16
CLK3-225ENST00000569063 BLOC1S4Q9NUP1 217 aa22.31■■□□□ 1.16
CLK3-225ENST00000569063 FBXO2Q9UK22 296 aaPredicted RBP22.31■■□□□ 1.16
CLK3-225ENST00000569063 USP15Q9Y4E8 981 aaPredicted RBP22.31■■□□□ 1.16
CLK3-225ENST00000569063 MORC2Q9Y6X9 1032 aaPredicted RBP22.31■■□□□ 1.16
CLK3-225ENST00000569063 TDRD15B5MCY1 1934 aaKnown RBP22.31■■□□□ 1.16
CLK3-225ENST00000569063 PTGESO14684 152 aa22.3■■□□□ 1.16
CLK3-225ENST00000569063 PLCG1P19174 1290 aa22.3■■□□□ 1.16
CLK3-225ENST00000569063 SMTNP53814 917 aa22.3■■□□□ 1.16
CLK3-225ENST00000569063 TUSC3Q13454 348 aa22.3■■□□□ 1.16
CLK3-225ENST00000569063 TMEM87AQ8NBN3 555 aa22.3■■□□□ 1.16
CLK3-225ENST00000569063 TMEM161BQ8NDZ6 487 aa22.3■■□□□ 1.16
CLK3-225ENST00000569063 KHSRPQ92945 711 aaKnown RBP eCLIP22.3■■□□□ 1.16
CLK3-225ENST00000569063 HERC2P3Q9BVR0 1158 aa22.3■■□□□ 1.16
CLK3-225ENST00000569063 MRPL17Q9NRX2 175 aaKnown RBP22.3■■□□□ 1.16
CLK3-225ENST00000569063 ODF2LQ9ULJ1 636 aa22.3■■□□□ 1.16
CLK3-225ENST00000569063 SSX2IPQ9Y2D8 614 aa22.3■■□□□ 1.16
CLK3-225ENST00000569063 SRPRBQ9Y5M8 271 aaKnown RBP22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms