RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ANKRD18AQ8IVF6 992 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 HERC6Q8IVU3 1022 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 TRIM59Q8IWR1 403 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 SULF2Q8IWU5 870 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 LRRN4CLQ8ND94 238 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 FAM13CQ8NE31 585 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 FLAD1Q8NFF5 587 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 FLCNQ8NFG4 579 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 PLBD2Q8NHP8 589 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 TTC9Q92623 222 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 SLC5A5Q92911 643 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 ARL8AQ96BM9 186 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 C18orf8Q96DM3 657 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 TMEM41AQ96HV5 264 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 MAGEB10Q96LZ2 347 aaPredicted RBP3.44□□□□□ -1.86
VPS35-209ENST00000568642 MAP3K14Q99558 947 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 PI4K2AQ9BTU6 479 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 MRPL9Q9BYD2 267 aaKnown RBP3.44□□□□□ -1.86
VPS35-209ENST00000568642 UNKQ9C0B0 810 aaKnown RBP3.44□□□□□ -1.86
VPS35-209ENST00000568642 KIAA1683Q9H0B3 1180 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 TAF1DQ9H5J8 278 aaPredicted RBP3.44□□□□□ -1.86
VPS35-209ENST00000568642 CNTD2Q9H8S5 307 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 DBNDD1Q9H9R9 158 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 CYP26B1Q9NR63 512 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 CCM2LQ9NUG4 571 aaPredicted RBP3.44□□□□□ -1.86
VPS35-209ENST00000568642 TRMT1Q9NXH9 659 aaKnown RBP3.44□□□□□ -1.86
VPS35-209ENST00000568642 XPO7Q9UIA9 1087 aaKnown RBP3.44□□□□□ -1.86
VPS35-209ENST00000568642 LRCH1Q9Y2L9 728 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 EMC9Q9Y3B6 208 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 ATP6V0A2Q9Y487 856 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 PCDHGB2Q9Y5G2 931 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 C4AP0C0L4 1744 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 YTHDC2Q9H6S0 1430 aaKnown RBP3.44□□□□□ -1.86
VPS35-209ENST00000568642 HTTP42858 3142 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 ACEP12821 1306 aa3.44□□□□□ -1.86
VPS35-209ENST00000568642 DOPEY1Q5JWR5 2465 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 FAM186AA6NE01 2351 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 CDH23Q9H251 3354 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 FAM170AA1A519 330 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 ANKRD18BA2A2Z9 1011 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 KLHL33A6NCF5 533 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 FAM227AF5H4B4 570 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 F8W8V4 182 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 H7C0S8 307 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 IPO5O00410 1097 aaKnown RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 DVL2O14641 736 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 KPNA5O15131 536 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 HOXC11O43248 304 aaPredicted RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 HTATSF1O43719 755 aaKnown RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 ULK1O75385 1050 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 MAFO75444 373 aaPredicted RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 DDNO94850 711 aaPredicted RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 SGPL1O95470 568 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 A1BGP04217 495 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 KRT1P04264 644 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 SCG5P05408 212 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 GSNP06396 782 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 PSAPP07602 524 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 NAT1P18440 290 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 IL11P20809 199 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 PDCP20941 246 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 AGXTP21549 392 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 FGFR4P22455 802 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 CNTFP26441 200 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 PEX2P28328 305 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 ADKP55263 362 aaKnown RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 SCAND1P57086 179 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 IL2P60568 153 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 RING1Q06587 406 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 FOXO1Q12778 655 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 MAP4K2Q12851 820 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 FAPQ12884 760 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 BLMHQ13867 455 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 ZNF124Q15973 351 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 CCNG2Q16589 344 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 HIF1AQ16665 826 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 MPEG1Q2M385 716 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 SHROOM1Q2M3G4 852 aaPredicted RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 RILPL1Q5EBL4 403 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 ARSJQ5FYB0 599 aaPredicted RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 BROXQ5VW32 411 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 TDRD10Q5VZ19 366 aaKnown RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 KAZNQ674X7 775 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 ITPRIPL1Q6GPH6 555 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 STYK1Q6J9G0 422 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 LIN54Q6MZP7 749 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 LRFN4Q6PJG9 635 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 APOA5Q6Q788 366 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 KCNT2Q6UVM3 1135 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 CCDC149Q6ZUS6 474 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 UBE2R2Q712K3 238 aaPredicted RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 MAMDC2Q7Z304 686 aaPredicted RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 KCNK18Q7Z418 384 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 LRRTM4Q86VH4 590 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 ANKRD13BQ86YJ7 626 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 DZIP1LQ8IYY4 767 aaKnown RBP3.43□□□□□ -1.86
VPS35-209ENST00000568642 IGSF22Q8N9C0 903 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 TMEM145Q8NBT3 493 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 ACRBPQ8NEB7 543 aa3.43□□□□□ -1.86
VPS35-209ENST00000568642 STT3BQ8TCJ2 826 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms