RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 F8W810 466 aa16.57■□□□□ 0.24
CLN3-236ENST00000568558 TEX28O15482 410 aa16.57■□□□□ 0.24
CLN3-236ENST00000568558 B4GALT5O43286 388 aa16.57■□□□□ 0.24
CLN3-236ENST00000568558 GALR2O43603 387 aaPredicted RBP16.57■□□□□ 0.24
CLN3-236ENST00000568558 JAK2O60674 1132 aa16.57■□□□□ 0.24
CLN3-236ENST00000568558 XRCC6P12956 609 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLN3-236ENST00000568558 FOSBP53539 338 aa16.57■□□□□ 0.24
CLN3-236ENST00000568558 CDR2LQ86X02 465 aaPredicted RBP16.57■□□□□ 0.24
CLN3-236ENST00000568558 HACE1Q8IYU2 909 aa16.57■□□□□ 0.24
CLN3-236ENST00000568558 GSTCDQ8NEC7 633 aa16.57■□□□□ 0.24
CLN3-236ENST00000568558 POLR3FQ9H1D9 316 aaPredicted RBP16.57■□□□□ 0.24
CLN3-236ENST00000568558 RXFP1Q9HBX9 757 aa16.57■□□□□ 0.24
CLN3-236ENST00000568558 VWA8A3KMH1 1905 aa16.57■□□□□ 0.24
CLN3-236ENST00000568558 A0A087WWV3 80 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 A0A1B0GUA9 196 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 USO1O60763 962 aaKnown RBP16.56■□□□□ 0.24
CLN3-236ENST00000568558 NR1I2O75469 434 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 NPTXRO95502 500 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 GLUD1P00367 558 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 AKAP5P24588 427 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 DSG1Q02413 1049 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 TRIM29Q14134 588 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 SLC27A1Q6PCB7 646 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 ATOH1Q92858 354 aaPredicted RBP16.56■□□□□ 0.24
CLN3-236ENST00000568558 COLEC11Q9BWP8 271 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 RHOBTB2Q9BYZ6 727 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 TMEM60Q9H2L4 133 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 CHST7Q9NS84 486 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 DPP7Q9UHL4 492 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 DOCK6Q96HP0 2047 aa16.56■□□□□ 0.24
CLN3-236ENST00000568558 H0Y858 1186 aa16.55■□□□□ 0.24
CLN3-236ENST00000568558 SPATA31C1P0DKV0 1188 aa16.55■□□□□ 0.24
CLN3-236ENST00000568558 ST3GAL1Q11201 340 aa16.55■□□□□ 0.24
CLN3-236ENST00000568558 GRIK3Q13003 919 aa16.55■□□□□ 0.24
CLN3-236ENST00000568558 TDGQ13569 410 aa16.55■□□□□ 0.24
CLN3-236ENST00000568558 ASTLQ6HA08 431 aaPredicted RBP16.55■□□□□ 0.24
CLN3-236ENST00000568558 ELMSAN1Q6PJG2 1045 aa16.55■□□□□ 0.24
CLN3-236ENST00000568558 GPRC5CQ9NQ84 441 aa16.55■□□□□ 0.24
CLN3-236ENST00000568558 CCDC195A0A1B0GUA6 201 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 LRRIQ4A6NIV6 560 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 NEK4P51957 841 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 FUT10Q6P4F1 479 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 CYP26C1Q6V0L0 522 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 PPP4R3CPQ6ZMV5 832 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 MAEAQ7L5Y9 396 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 CATSPER3Q86XQ3 398 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 MCPH1Q8NEM0 835 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 HDAC7Q8WUI4 952 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 B3GALT6Q96L58 329 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 PRIMPOLQ96LW4 560 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 GPR62Q9BZJ7 368 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 MFSD1Q9H3U5 465 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 KCNK12Q9HB15 430 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 WDR6Q9NNW5 1121 aaKnown RBP16.54■□□□□ 0.24
CLN3-236ENST00000568558 TUFT1Q9NNX1 390 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 PRMT7Q9NVM4 692 aaPredicted RBP16.54■□□□□ 0.24
CLN3-236ENST00000568558 KLK14Q9P0G3 267 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 ADAM28Q9UKQ2 775 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 DUSP12Q9UNI6 340 aa16.54■□□□□ 0.24
CLN3-236ENST00000568558 ZFHX2Q9C0A1 2572 aaPredicted RBP16.53■□□□□ 0.24
CLN3-236ENST00000568558 MYH15Q9Y2K3 1946 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 CLUHO75153 1309 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 ST18O60284 1047 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 GFRA3O60609 400 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 N4BP1O75113 896 aaKnown RBP16.53■□□□□ 0.24
CLN3-236ENST00000568558 MED24O75448 989 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 RFPL2O75678 378 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 PAPLNO95428 1278 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 C1RP00736 705 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 MYBP10242 640 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 MCM7P33993 719 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 CLCN5P51795 746 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 USP41Q3LFD5 358 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 CDCA2Q69YH5 1023 aaPredicted RBP16.53■□□□□ 0.24
CLN3-236ENST00000568558 CWF19L1Q69YN2 538 aaKnown RBP16.53■□□□□ 0.24
CLN3-236ENST00000568558 GPR65Q8IYL9 337 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 FZD8Q9H461 694 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.53■□□□□ 0.24
CLN3-236ENST00000568558 FNIP2Q9P278 1114 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 IGSF9Q9P2J2 1179 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 PARP2Q9UGN5 583 aa16.53■□□□□ 0.24
CLN3-236ENST00000568558 SPATA31D3P0C874 917 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 ATP2B1P20020 1258 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 GUCY1B3Q02153 619 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 FAM187BQ17R55 369 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 SPATA31D4Q6ZUB0 917 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 PALB2Q86YC2 1186 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 ZBTB8OSQ8IWT0 167 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 FLCNQ8NFG4 579 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 SMG7Q92540 1137 aaKnown RBP16.52■□□□□ 0.24
CLN3-236ENST00000568558 RABGGTAQ92696 567 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 STAMQ92783 540 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 ZNF707Q96C28 371 aaPredicted RBP16.52■□□□□ 0.24
CLN3-236ENST00000568558 NACC1Q96RE7 527 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 PAAF1Q9BRP4 392 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 POLR3CQ9BUI4 534 aaPredicted RBP16.52■□□□□ 0.24
CLN3-236ENST00000568558 PLEKHA4Q9H4M7 779 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 CACNG4Q9UBN1 327 aa16.52■□□□□ 0.24
CLN3-236ENST00000568558 TTLL13PA6NNM8 815 aa16.51■□□□□ 0.23
CLN3-236ENST00000568558 PROB1E7EW31 1015 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms