RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 KCNAB2Q13303 367 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 UBE4AQ14139 1066 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 SF1Q15637 639 aaKnown RBP6.79□□□□□ -1.32
VPS39-209ENST00000568029 LRIT3Q3SXY7 679 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 CAVIN4Q5BKX8 364 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 CCDC183Q5T5S1 534 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 ATL3Q6DD88 541 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 NAA16Q6N069 864 aaPredicted RBP6.79□□□□□ -1.32
VPS39-209ENST00000568029 NFXL1Q6ZNB6 911 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 STOX1Q6ZVD7 989 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 MAMDC2Q7Z304 686 aaPredicted RBP6.79□□□□□ -1.32
VPS39-209ENST00000568029 SPRED2Q7Z698 418 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 GAS2L3Q86XJ1 694 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 APOBEC3FQ8IUX4 373 aaKnown RBP6.79□□□□□ -1.32
VPS39-209ENST00000568029 CERS5Q8N5B7 392 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 AGBL5Q8NDL9 886 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 FRS2Q8WU20 508 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 LINC01599Q8WXQ3 324 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 PTCHD1Q96NR3 888 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 ALPK1Q96QP1 1244 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 ZFYVE21Q9BQ24 234 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 NACAP1Q9BZK3 213 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 ANKRD2Q9GZV1 360 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 PUS7LQ9H0K6 701 aaKnown RBP6.79□□□□□ -1.32
VPS39-209ENST00000568029 CARS2Q9HA77 564 aaKnown RBP6.79□□□□□ -1.32
VPS39-209ENST00000568029 PIH1D3Q9NQM4 214 aaKnown RBP6.79□□□□□ -1.32
VPS39-209ENST00000568029 TNFRSF10DQ9UBN6 386 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 CPA4Q9UI42 421 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 GABRQQ9UN88 632 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 CNPY2Q9Y2B0 182 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 PRC1O43663 620 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 EFCAB14O75071 495 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 ASMTLO95671 621 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 PDIA3P30101 505 aaKnown RBP6.78□□□□□ -1.32
VPS39-209ENST00000568029 SSTR4P31391 388 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 ECI1P42126 302 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 KIR2DL1P43626 348 aaPredicted RBP6.78□□□□□ -1.32
VPS39-209ENST00000568029 KIR2DL2P43627 348 aaPredicted RBP6.78□□□□□ -1.32
VPS39-209ENST00000568029 EVCP57679 992 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 RPS8P62241 208 aaKnown RBP6.78□□□□□ -1.32
VPS39-209ENST00000568029 ZP2Q05996 745 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 CCDC173Q0VFZ6 552 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 ST3GAL1Q11201 340 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 VGLL4Q14135 290 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 TTLL5Q6EMB2 1281 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 SLC23A3Q6PIS1 610 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 CPLX2Q6PUV4 134 aaKnown RBP6.78□□□□□ -1.32
VPS39-209ENST00000568029 TDHQ8IZJ6 230 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 SMARCC2Q8TAQ2 1214 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 DCAF4Q8WV16 495 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 PTPRN2Q92932 1015 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 TRIM44Q96DX7 344 aaPredicted RBP6.78□□□□□ -1.32
VPS39-209ENST00000568029 PAWRQ96IZ0 340 aaKnown RBP6.78□□□□□ -1.32
VPS39-209ENST00000568029 ZNF396Q96N95 335 aaPredicted RBP6.78□□□□□ -1.32
VPS39-209ENST00000568029 STRBPQ96SI9 672 aaKnown RBP6.78□□□□□ -1.32
VPS39-209ENST00000568029 G6PC3Q9BUM1 346 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 CDADC1Q9BWV3 514 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 LRRC2Q9BYS8 371 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 TSPY26PQ9H489 355 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 PAK6Q9NQU5 681 aaPredicted RBP6.78□□□□□ -1.32
VPS39-209ENST00000568029 AP5S1Q9NUS5 200 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 ERVK13-1Q9NX77 482 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 SRRDQ9UH36 339 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 CFAP45Q9UL16 551 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 JAG2Q9Y219 1238 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 PRKAB1Q9Y478 270 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 LTBP2Q14767 1821 aa6.78□□□□□ -1.32
VPS39-209ENST00000568029 ELP1O95163 1332 aa6.77□□□□□ -1.32
VPS39-209ENST00000568029 ZMYM6O95789 1325 aa6.77□□□□□ -1.32
VPS39-209ENST00000568029 MYPNQ86TC9 1320 aa6.77□□□□□ -1.32
VPS39-209ENST00000568029 ADGRA2Q96PE1 1338 aa6.77□□□□□ -1.32
VPS39-209ENST00000568029 TTC28Q96AY4 2481 aa6.77□□□□□ -1.32
VPS39-209ENST00000568029 MAST2Q6P0Q8 1798 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 TCRBV5S4A2TA0A5A2 114 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 SYCE3A1L190 88 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 BTBD19C9JJ37 291 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 F8W031 263 aaPredicted RBP6.77□□□□□ -1.33
VPS39-209ENST00000568029 CPLX1O14810 134 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 MEFVO15553 781 aaPredicted RBP6.77□□□□□ -1.33
VPS39-209ENST00000568029 FIBPO43427 364 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 TLR2O60603 784 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 PAMP19021 973 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 PSMC4P43686 418 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 HAND2P61296 217 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 CCT2P78371 535 aaKnown RBP6.77□□□□□ -1.33
VPS39-209ENST00000568029 LRP8Q14114 963 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 NTRK3Q16288 839 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 DENND5AQ6IQ26 1287 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 TMED8Q6PL24 325 aaPredicted RBP6.77□□□□□ -1.33
VPS39-209ENST00000568029 SYNE3Q6ZMZ3 975 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 MB21D2Q8IYB1 491 aaPredicted RBP6.77□□□□□ -1.33
VPS39-209ENST00000568029 Q8N3U1 123 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 MAGEB6Q8N7X4 407 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 USP38Q8NB14 1042 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 NSUN7Q8NE18 718 aaKnown RBP6.77□□□□□ -1.33
VPS39-209ENST00000568029 GSTCDQ8NEC7 633 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 FLCNQ8NFG4 579 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 MAP6Q96JE9 813 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 CHAMP1Q96JM3 812 aa6.77□□□□□ -1.33
VPS39-209ENST00000568029 DEFB118Q96PH6 123 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms