RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 MAPK7Q13164 816 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 ADGRD2Q7Z7M1 963 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 CMTR2Q8IYT2 770 aaKnown RBP18.99■□□□□ 0.63
CLN3-217ENST00000565354 MYCT1Q8N699 235 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 FSIP1Q8NA03 581 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 LINC01599Q8WXQ3 324 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 MRPS27Q92552 414 aaKnown RBP18.99■□□□□ 0.63
CLN3-217ENST00000565354 KIFC3Q9BVG8 833 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 CHST12Q9NRB3 414 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 RGS18Q9NS28 235 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 AGPAT5Q9NUQ2 364 aa18.99■□□□□ 0.63
CLN3-217ENST00000565354 A0A1W2PQ27 194 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 A0A1W2PQ64 194 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 A0A1W2PQD8 194 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 AXLP30530 894 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 NPTX2P47972 431 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 SARSP49591 514 aaKnown RBP18.98■□□□□ 0.63
CLN3-217ENST00000565354 EFNA5P52803 228 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 GIT2Q14161 759 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 MAPK6Q16659 721 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 CDCA2Q69YH5 1023 aaPredicted RBP18.98■□□□□ 0.63
CLN3-217ENST00000565354 SLC24A5Q71RS6 500 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 DAW1Q8N136 415 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 CRIPAKQ8N1N5 446 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 DDX12PQ92771 950 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 TNMDQ9H2S6 317 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 MAGEF1Q9HAY2 307 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 PARVGQ9HBI0 331 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 PCDHB7Q9Y5E2 793 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 PHLPP2Q6ZVD8 1323 aa18.98■□□□□ 0.63
CLN3-217ENST00000565354 MYH11P35749 1972 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 MYMKA6NI61 221 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 H0YCG3 227 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 K7ERI5 159 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 SLC16A4O15374 487 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 GLP2RO95838 553 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 PRKCBP05771 671 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 IDEP14735 1019 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 SYKP43405 635 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 NRIP1P48552 1158 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 DSC3Q14574 896 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 E2F4Q16254 413 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 NOTUMQ6P988 496 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 RTN4RL1Q86UN2 441 aaPredicted RBP18.97■□□□□ 0.63
CLN3-217ENST00000565354 NPAS4Q8IUM7 802 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 KLHL23Q8NBE8 558 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 STAMQ92783 540 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 USP15Q9Y4E8 981 aaPredicted RBP18.97■□□□□ 0.63
CLN3-217ENST00000565354 MYO15AQ9UKN7 3530 aa18.97■□□□□ 0.63
CLN3-217ENST00000565354 RIF1Q5UIP0 2472 aaKnown RBP18.96■□□□□ 0.63
CLN3-217ENST00000565354 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.96■□□□□ 0.63
CLN3-217ENST00000565354 TSPAN1O60635 241 aa18.96■□□□□ 0.63
CLN3-217ENST00000565354 SKIP12755 728 aa18.96■□□□□ 0.63
CLN3-217ENST00000565354 SIGLEC14Q08ET2 396 aa18.96■□□□□ 0.63
CLN3-217ENST00000565354 STRN3Q13033 797 aa18.96■□□□□ 0.63
CLN3-217ENST00000565354 PRPF4BQ13523 1007 aaKnown RBP18.96■□□□□ 0.63
CLN3-217ENST00000565354 RNF169Q8NCN4 708 aa18.96■□□□□ 0.63
CLN3-217ENST00000565354 POF1BQ8WVV4 589 aa18.96■□□□□ 0.63
CLN3-217ENST00000565354 SPIRE2Q8WWL2 714 aa18.96■□□□□ 0.63
CLN3-217ENST00000565354 CPB2Q96IY4 423 aa18.96■□□□□ 0.63
CLN3-217ENST00000565354 PRIMPOLQ96LW4 560 aa18.96■□□□□ 0.63
CLN3-217ENST00000565354 PHF7Q9BWX1 381 aaPredicted RBP18.96■□□□□ 0.63
CLN3-217ENST00000565354 USP25Q9UHP3 1055 aa18.96■□□□□ 0.63
CLN3-217ENST00000565354 SERTAD1Q9UHV2 236 aa18.96■□□□□ 0.63
CLN3-217ENST00000565354 BARX2Q9UMQ3 279 aaPredicted RBP18.96■□□□□ 0.63
CLN3-217ENST00000565354 C9IYK1 514 aa18.95■□□□□ 0.62
CLN3-217ENST00000565354 K7ENM7 598 aa18.95■□□□□ 0.62
CLN3-217ENST00000565354 RAB27AP51159 221 aa18.95■□□□□ 0.62
CLN3-217ENST00000565354 PAN2Q504Q3 1202 aaKnown RBP18.95■□□□□ 0.62
CLN3-217ENST00000565354 RBM23Q86U06 439 aaKnown RBP18.95■□□□□ 0.62
CLN3-217ENST00000565354 CCDC51Q96ER9 411 aa18.95■□□□□ 0.62
CLN3-217ENST00000565354 CCDC34Q96HJ3 373 aa18.95■□□□□ 0.62
CLN3-217ENST00000565354 TRIM6Q9C030 488 aaPredicted RBP18.95■□□□□ 0.62
CLN3-217ENST00000565354 ACKR2O00590 384 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 TRAK2O60296 914 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 GFRA3O60609 400 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 GAP43P17677 238 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 ARF4P18085 180 aaPredicted RBP18.94■□□□□ 0.62
CLN3-217ENST00000565354 AFMP43652 599 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 NDUFA8P51970 172 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 ASIC1P78348 528 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 FAM187BQ17R55 369 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 PPP4R3CPQ6ZMV5 832 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 ECHDC2Q86YB7 292 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 CCDC65Q8IXS2 484 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 RPGRIP1Q96KN7 1286 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 ADPGKQ9BRR6 497 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 FZD8Q9H461 694 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 TMEM134Q9H6X4 195 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 ELAC1Q9H777 363 aaKnown RBP18.94■□□□□ 0.62
CLN3-217ENST00000565354 FAM105AQ9NUU6 356 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 FAM86C1Q9NVL1 165 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 KBTBD4Q9NVX7 518 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 TMEM161AQ9NX61 479 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 HPSEQ9Y251 543 aa18.94■□□□□ 0.62
CLN3-217ENST00000565354 FNDC1Q4ZHG4 1894 aaPredicted RBP18.94■□□□□ 0.62
CLN3-217ENST00000565354 A0A0U1RQF3 1178 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 N4BP3O15049 544 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 B4GALT5O43286 388 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 HOXA2O43364 376 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms