RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 LUZP1Q86V48 1076 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 CSGALNACT2Q8N6G5 542 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 CEP120Q8N960 986 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 DBF4BQ8NFT6 615 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 TMEM174Q8WUU8 243 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 CCDC51Q96ER9 411 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 MSTO1Q9BUK6 570 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 HSD3B7Q9H2F3 369 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 CHST12Q9NRB3 414 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 NFE2L3Q9Y4A8 694 aa18.12■□□□□ 0.49
VPS4A-202ENST00000562754 GOLGA8IPA6NC78 632 aa18.11■□□□□ 0.49
VPS4A-202ENST00000562754 GOLGA8JA6NMD2 632 aa18.11■□□□□ 0.49
VPS4A-202ENST00000562754 IKBKBO14920 756 aa18.11■□□□□ 0.49
VPS4A-202ENST00000562754 CSF2RAP15509 400 aa18.11■□□□□ 0.49
VPS4A-202ENST00000562754 CASP4P49662 377 aa18.11■□□□□ 0.49
VPS4A-202ENST00000562754 FKBP3Q00688 224 aaKnown RBP18.11■□□□□ 0.49
VPS4A-202ENST00000562754 MYBPC2Q14324 1141 aa18.11■□□□□ 0.49
VPS4A-202ENST00000562754 DCAF4L1Q3SXM0 396 aa18.11■□□□□ 0.49
VPS4A-202ENST00000562754 TWF2Q6IBS0 349 aaKnown RBP18.11■□□□□ 0.49
VPS4A-202ENST00000562754 RNF214Q8ND24 703 aa18.11■□□□□ 0.49
VPS4A-202ENST00000562754 SEPT8Q92599 483 aa18.11■□□□□ 0.49
VPS4A-202ENST00000562754 TCHPQ9BT92 498 aa18.11■□□□□ 0.49
VPS4A-202ENST00000562754 SRRTQ9BXP5 876 aaKnown RBP18.11■□□□□ 0.49
VPS4A-202ENST00000562754 PRKAG2Q9UGJ0 569 aa18.11■□□□□ 0.49
VPS4A-202ENST00000562754 AGO2Q9UKV8 859 aaKnown RBP18.11■□□□□ 0.49
VPS4A-202ENST00000562754 ZMYND8Q9ULU4 1186 aaPredicted RBP18.11■□□□□ 0.49
VPS4A-202ENST00000562754 ANK1P16157 1881 aa18.11■□□□□ 0.49
VPS4A-202ENST00000562754 MKI67P46013 3256 aaKnown RBP18.11■□□□□ 0.49
VPS4A-202ENST00000562754 RALGAPA2Q2PPJ7 1873 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 OGTO15294 1046 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 ADRB2P07550 413 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 SYN1P17600 705 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 ADAM9Q13443 819 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 SEZ6Q53EL9 994 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 CRELD2Q6UXH1 353 aaPredicted RBP18.1■□□□□ 0.49
VPS4A-202ENST00000562754 RTN4RL1Q86UN2 441 aaPredicted RBP18.1■□□□□ 0.49
VPS4A-202ENST00000562754 IRF2BP1Q8IU81 584 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 TMEM199Q8N511 208 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 XXYLT1Q8NBI6 393 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 BADQ92934 168 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 FBXL18Q96ME1 805 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 CEP63Q96MT8 703 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 ADAM2Q99965 735 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 ADPGKQ9BRR6 497 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 RBSNQ9H1K0 784 aa18.1■□□□□ 0.49
VPS4A-202ENST00000562754 SAMSN1Q9NSI8 373 aaKnown RBP18.1■□□□□ 0.49
VPS4A-202ENST00000562754 KIAA0391O15091 583 aaKnown RBP18.09■□□□□ 0.49
VPS4A-202ENST00000562754 CETN3O15182 167 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 EXTL3O43909 919 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 EXOC3O60645 756 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 AKAP3O75969 853 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 RPL13P26373 211 aaKnown RBP18.09■□□□□ 0.49
VPS4A-202ENST00000562754 TNFSF9P41273 254 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 ACOT2P49753 483 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 TPD52L1Q16890 204 aaPredicted RBP18.09■□□□□ 0.49
VPS4A-202ENST00000562754 HSP90AA4PQ58FG1 418 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 CDKAL1Q5VV42 579 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 CEP135Q66GS9 1140 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 CBWD2Q8IUF1 395 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 TMEM192Q8IY95 271 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 THNSL1Q8IYQ7 743 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 GPD1LQ8N335 351 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 SMG8Q8ND04 991 aaKnown RBP18.09■□□□□ 0.49
VPS4A-202ENST00000562754 DPF3Q92784 378 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 APBB2Q92870 758 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 FAM213AQ9BRX8 229 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 TRAIPQ9BWF2 469 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 TSPYL2Q9H2G4 693 aaPredicted RBP18.09■□□□□ 0.49
VPS4A-202ENST00000562754 NXF3Q9H4D5 531 aaKnown RBP18.09■□□□□ 0.49
VPS4A-202ENST00000562754 FANCLQ9NW38 375 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 CITO14578 2027 aa18.09■□□□□ 0.49
VPS4A-202ENST00000562754 SMTNL1A8MU46 457 aa18.08■□□□□ 0.48
VPS4A-202ENST00000562754 MEFVO15553 781 aaPredicted RBP18.08■□□□□ 0.48
VPS4A-202ENST00000562754 ZSCAN20P17040 1043 aaPredicted RBP18.08■□□□□ 0.48
VPS4A-202ENST00000562754 GRM5P41594 1212 aa18.08■□□□□ 0.48
VPS4A-202ENST00000562754 CNKSR3Q6P9H4 555 aa18.08■□□□□ 0.48
VPS4A-202ENST00000562754 APBB1IPQ7Z5R6 666 aaPredicted RBP18.08■□□□□ 0.48
VPS4A-202ENST00000562754 NOC3LQ8WTT2 800 aaKnown RBP18.08■□□□□ 0.48
VPS4A-202ENST00000562754 FTHL17Q9BXU8 183 aa18.08■□□□□ 0.48
VPS4A-202ENST00000562754 THAP9Q9H5L6 903 aa18.08■□□□□ 0.48
VPS4A-202ENST00000562754 RGS18Q9NS28 235 aa18.08■□□□□ 0.48
VPS4A-202ENST00000562754 FAM105AQ9NUU6 356 aa18.08■□□□□ 0.48
VPS4A-202ENST00000562754 CPSF3Q9UKF6 684 aaKnown RBP18.08■□□□□ 0.48
VPS4A-202ENST00000562754 HES2Q9Y543 173 aa18.08■□□□□ 0.48
VPS4A-202ENST00000562754 IPPQ9Y573 584 aa18.08■□□□□ 0.48
VPS4A-202ENST00000562754 PCDHB2Q9Y5E7 798 aa18.08■□□□□ 0.48
VPS4A-202ENST00000562754 BECN2A8MW95 431 aa18.07■□□□□ 0.48
VPS4A-202ENST00000562754 C9IYK1 514 aa18.07■□□□□ 0.48
VPS4A-202ENST00000562754 SLC16A3O15427 465 aaKnown RBP18.07■□□□□ 0.48
VPS4A-202ENST00000562754 STAG3L1P0CL83 205 aa18.07■□□□□ 0.48
VPS4A-202ENST00000562754 ACRP10323 421 aa18.07■□□□□ 0.48
VPS4A-202ENST00000562754 ZNF18P17022 549 aa18.07■□□□□ 0.48
VPS4A-202ENST00000562754 ATF7P17544 494 aaPredicted RBP18.07■□□□□ 0.48
VPS4A-202ENST00000562754 OSTNP61366 133 aa18.07■□□□□ 0.48
VPS4A-202ENST00000562754 FPGSQ05932 587 aa18.07■□□□□ 0.48
VPS4A-202ENST00000562754 SNRNP35Q16560 246 aaKnown RBP18.07■□□□□ 0.48
VPS4A-202ENST00000562754 FILIP1Q7Z7B0 1213 aa18.07■□□□□ 0.48
VPS4A-202ENST00000562754 FAM186BQ8IYM0 893 aa18.07■□□□□ 0.48
VPS4A-202ENST00000562754 BORCS6Q96GS4 357 aa18.07■□□□□ 0.48
VPS4A-202ENST00000562754 CNOT6LQ96LI5 555 aaKnown RBP18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms