RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 MAEAQ7L5Y9 396 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 TRAPPC11Q7Z392 1133 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 IRF2BP2Q7Z5L9 587 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 GPR142Q7Z601 462 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 BRSK2Q8IWQ3 736 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 SLC35F6Q8N357 371 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 ANKRD13CQ8N6S4 541 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 MSANTD4Q8NCY6 345 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 CAGE1Q8TC20 777 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 BRI3BPQ8WY22 251 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 RFFLQ8WZ73 363 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 PBKQ96KB5 322 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 RUNDC3BQ96NL0 473 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 UIMC1Q96RL1 719 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 CGRRF1Q99675 332 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 CBWD1Q9BRT8 395 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 TINF2Q9BSI4 451 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 CRACR2AQ9BSW2 395 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 MSTO1Q9BUK6 570 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 MIS12Q9H081 205 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 TXNRD2Q9NNW7 524 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.12□□□□□ -1.11
VPS39-204ENST00000561818 RBAKQ9NYW8 714 aaPredicted RBP8.12□□□□□ -1.11
VPS39-204ENST00000561818 NAGPAQ9UK23 515 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 SNX12Q9UMY4 172 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 CEP83Q9Y592 693 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 FHOD1Q9Y613 1164 aa8.12□□□□□ -1.11
VPS39-204ENST00000561818 LCTP09848 1927 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 NRCAMQ92823 1304 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 ZBTB39O15060 712 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 XPOTO43592 962 aaKnown RBP8.11□□□□□ -1.11
VPS39-204ENST00000561818 TNNC2P02585 160 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 PRKCBP05771 671 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 MCF2P10911 925 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 TNNI1P19237 187 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 SLC9A1P19634 815 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 KLK7P49862 253 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 HUNKP57058 714 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 SP2Q02086 613 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 PTK2Q05397 1052 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 GOLGA8FQ08AF8 430 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 GOLGA8DPQ0D2H9 430 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 LAMTOR4Q0VGL1 99 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 MAP2K5Q13163 448 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 ARHGEF6Q15052 776 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 PLCB4Q15147 1175 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 DUOXA2Q1HG44 320 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 ZACNQ401N2 412 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 MAP1SQ66K74 1059 aaPredicted RBP8.11□□□□□ -1.11
VPS39-204ENST00000561818 TMCO3Q6UWJ1 677 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 MPZL3Q6UWV2 235 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 TSHZ1Q6ZSZ6 1077 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 FBXO16Q8IX29 292 aaPredicted RBP8.11□□□□□ -1.11
VPS39-204ENST00000561818 GOLGA6L1Q8N7Z2 621 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 EIF1ADQ8N9N8 165 aaKnown RBP8.11□□□□□ -1.11
VPS39-204ENST00000561818 HNRNPLLQ8WVV9 542 aaKnown RBP8.11□□□□□ -1.11
VPS39-204ENST00000561818 SHC3Q92529 594 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 ANKRD36BP1Q96IX9 119 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 VCPIP1Q96JH7 1222 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 MAML3Q96JK9 1138 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 WDR24Q96S15 920 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 CEP89Q96ST8 783 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 APBA2Q99767 749 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 TMEM117Q9H0C3 514 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 ASB7Q9H672 318 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 SPC25Q9HBM1 224 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 SIX2Q9NPC8 291 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 GPRC5CQ9NQ84 441 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 SUCLA2Q9P2R7 463 aaPredicted RBP8.11□□□□□ -1.11
VPS39-204ENST00000561818 UVRAGQ9P2Y5 699 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 ADAMTS1Q9UHI8 967 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 FZD1Q9UP38 647 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 TNFSF13BQ9Y275 285 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 REXO2Q9Y3B8 237 aaKnown RBP8.11□□□□□ -1.11
VPS39-204ENST00000561818 PCDHB2Q9Y5E7 798 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 TRPM7Q96QT4 1865 aa8.11□□□□□ -1.11
VPS39-204ENST00000561818 PLXNB2O15031 1838 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 SIP14410 1827 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 NCANO14594 1321 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 CNTNAP2Q9UHC6 1331 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 WDR81Q562E7 1941 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 GOLGA6L10A0A0M3HER8 536 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 MACROD2A1Z1Q3 448 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 RNF225M0QZC1 329 aaPredicted RBP8.1□□□□□ -1.11
VPS39-204ENST00000561818 EPHB6O15197 1021 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 B4GALT4O60513 344 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 TLR2O60603 784 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 PHACTR2O75167 634 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 RTN2O75298 545 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 LSM8O95777 96 aaKnown RBP8.1□□□□□ -1.11
VPS39-204ENST00000561818 LGALS2P05162 132 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 CLTAP09496 248 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 DESP17661 470 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 ADSSP30520 456 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 ATICP31939 592 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 GBP1P32455 592 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 GJA5P36382 358 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 PIK3CAP42336 1068 aa8.1□□□□□ -1.11
VPS39-204ENST00000561818 ZNF157P51786 506 aaPredicted RBP8.1□□□□□ -1.11
VPS39-204ENST00000561818 SNX16P57768 344 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms