RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 ZYXQ15942 572 aaKnown RBP12.17□□□□□ -0.46
CUX1-218ENST00000560541 DBN1Q16643 649 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 TTC27Q6P3X3 843 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 EPS8L3Q8TE67 593 aaKnown RBP12.17□□□□□ -0.46
CUX1-218ENST00000560541 XPO6Q96QU8 1125 aaKnown RBP12.17□□□□□ -0.46
CUX1-218ENST00000560541 AGPAT1Q99943 283 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 TXLNGYQ9BZA5 131 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 MTFR1LQ9H019 292 aa12.17□□□□□ -0.46
CUX1-218ENST00000560541 FRMPD4Q14CM0 1322 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 MMEP08473 750 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 ARP10275 920 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 DRD4P21917 467 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 KCNJ1P48048 391 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 PAPOLAP51003 745 aaKnown RBP12.16□□□□□ -0.46
CUX1-218ENST00000560541 FUKQ8N0W3 1084 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 PABPC3Q9H361 631 aaKnown RBP12.16□□□□□ -0.46
CUX1-218ENST00000560541 TDRD3Q9H7E2 651 aaKnown RBP12.16□□□□□ -0.46
CUX1-218ENST00000560541 PAPOLBQ9NRJ5 636 aaKnown RBP12.16□□□□□ -0.46
CUX1-218ENST00000560541 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.16□□□□□ -0.46
CUX1-218ENST00000560541 TTC7AQ9ULT0 858 aaPredicted RBP12.16□□□□□ -0.46
CUX1-218ENST00000560541 ANKRD63C9JTQ0 380 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 K7ENM7 598 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 ATP6V1G1O75348 118 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 PSMD10O75832 226 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 NEFHP12036 1026 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 ADRA2BP18089 450 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 CWF19L1Q69YN2 538 aaKnown RBP12.16□□□□□ -0.46
CUX1-218ENST00000560541 ARMC9Q7Z3E5 817 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 HOOK3Q86VS8 718 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 PRELID2Q8N945 189 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 TLCD1Q96CP7 247 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 CHMP6Q96FZ7 201 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 ZDHHC15Q96MV8 337 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 LXNQ9BS40 222 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 MMADHCQ9H3L0 296 aaPredicted RBP12.16□□□□□ -0.46
CUX1-218ENST00000560541 ZBTB21Q9ULJ3 1066 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 GREB1LQ9C091 1923 aaPredicted RBP12.16□□□□□ -0.46
CUX1-218ENST00000560541 RPTORQ8N122 1335 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 HIP1RO75146 1068 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 SMIM24O75264 130 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 COMTP21964 271 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 SCTRP47872 440 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 PPP3CAQ08209 521 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 MAB21L3Q8N8X9 362 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 NAP1L3Q99457 506 aaPredicted RBP12.16□□□□□ -0.46
CUX1-218ENST00000560541 UNC45AQ9H3U1 944 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 L3MBTL1Q9Y468 752 aa12.16□□□□□ -0.46
CUX1-218ENST00000560541 SRRM3A6NNA2 597 aaPredicted RBP12.15□□□□□ -0.46
CUX1-218ENST00000560541 RGS16O15492 202 aaPredicted RBP12.15□□□□□ -0.46
CUX1-218ENST00000560541 PAEPP09466 180 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 PRELPP51888 382 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 ERMARDQ5T6L9 678 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 TATDN1Q6P1N9 297 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 CCDC137Q6PK04 289 aaKnown RBP12.15□□□□□ -0.46
CUX1-218ENST00000560541 NSMFQ6X4W1 530 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 ARHGAP22Q7Z5H3 698 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 POP1Q99575 1024 aaKnown RBP12.15□□□□□ -0.46
CUX1-218ENST00000560541 CBWD1Q9BRT8 395 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 GRHL1Q9NZI5 618 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 PYGMP11217 842 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 OTUD6AQ7L8S5 288 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 LMO3Q8TAP4 145 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 FAM81AQ8TBF8 368 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 ACER1Q8TDN7 264 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 HVCN1Q96D96 273 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 GMCL1Q96IK5 515 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 TSC22D3Q99576 134 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 PRMT1Q99873 361 aaKnown RBP12.15□□□□□ -0.46
CUX1-218ENST00000560541 ZNF577Q9BSK1 485 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 MKNK1Q9BUB5 465 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 FAM129AQ9BZQ8 928 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 TUFT1Q9NNX1 390 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 DMAC2Q9NW81 257 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 GGT7Q9UJ14 662 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 GGA2Q9UJY4 613 aa12.15□□□□□ -0.46
CUX1-218ENST00000560541 DBR1Q9UK59 544 aaKnown RBP12.15□□□□□ -0.46
CUX1-218ENST00000560541 C10orf71Q711Q0 1435 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 ARHGEF35A5YM69 484 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 GOLGA8IPA6NC78 632 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 GOLGA8JA6NMD2 632 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 PHF2O75151 1096 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 SGPL1O95470 568 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 PTGIRP43119 386 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 EIF3BP55884 814 aaKnown RBP12.14□□□□□ -0.47
CUX1-218ENST00000560541 SLC15A2Q16348 729 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 LRRC23Q53EV4 343 aaPredicted RBP12.14□□□□□ -0.47
CUX1-218ENST00000560541 RBM26Q5T8P6 1007 aaKnown RBP12.14□□□□□ -0.47
CUX1-218ENST00000560541 CCDC105Q8IYK2 499 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 DAW1Q8N136 415 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 MGARPQ8TDB4 240 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 PCDHB18PQ96TA0 734 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 ADAM7Q9H2U9 754 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 HOMER3Q9NSC5 361 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 DNAJC17Q9NVM6 304 aaKnown RBP12.14□□□□□ -0.47
CUX1-218ENST00000560541 RASAL2Q9UJF2 1139 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 TMEM150BA6NC51 233 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 C5orf60A6NFR6 353 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 FOXO6A8MYZ6 492 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 VIMP08670 466 aaKnown RBP12.14□□□□□ -0.47
CUX1-218ENST00000560541 CYP3A4P08684 503 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms