RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 SPOPLQ6IQ16 392 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 TRIM50Q86XT4 487 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 EPS8L1Q8TE68 723 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 ZNF516Q92618 1163 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 DCPSQ96C86 337 aaKnown RBP11.46□□□□□ -0.57
CUX1-217ENST00000558836 IFT74Q96LB3 600 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 FAM204AQ9H8W3 233 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 RNF181Q9P0P0 153 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 AMFRQ9UKV5 643 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 SYNGAP1Q96PV0 1343 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 GOLGA6BA6NDN3 693 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 SOWAHBA6NEL2 793 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 TTLL13PA6NNM8 815 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 FGGP02679 453 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 EDN1P05305 212 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 TMEM253P0C7T8 217 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 CCDC172P0C7W6 258 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 ZBTB48P10074 688 aaPredicted RBP11.46□□□□□ -0.57
CUX1-217ENST00000558836 KRT5P13647 590 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 TNNI1P19237 187 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 CYP2C19P33261 490 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 MARCKSL1P49006 195 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 CYP24A1Q07973 514 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 SKIDA1Q1XH10 827 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 LBX2Q6XYB7 198 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 SLFN11Q7Z7L1 901 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 CDHR1Q96JP9 859 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 HAPLN2Q9GZV7 340 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 TXNRD2Q9NNW7 524 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 RAB20Q9NX57 234 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 STXBP5LQ9Y2K9 1186 aa11.46□□□□□ -0.57
CUX1-217ENST00000558836 MESDQ14696 234 aa11.46□□□□□ -0.58
CUX1-217ENST00000558836 Q3C1V9 767 aa11.46□□□□□ -0.58
CUX1-217ENST00000558836 XKR3Q5GH77 459 aa11.46□□□□□ -0.58
CUX1-217ENST00000558836 GPD1LQ8N335 351 aa11.46□□□□□ -0.58
CUX1-217ENST00000558836 FBXL13Q8NEE6 735 aa11.46□□□□□ -0.58
CUX1-217ENST00000558836 MCPH1Q8NEM0 835 aa11.46□□□□□ -0.58
CUX1-217ENST00000558836 RDM1Q8NG50 284 aa11.46□□□□□ -0.58
CUX1-217ENST00000558836 HELQQ8TDG4 1101 aa11.46□□□□□ -0.58
CUX1-217ENST00000558836 LMBR1Q8WVP7 490 aa11.46□□□□□ -0.58
CUX1-217ENST00000558836 ALG3Q92685 438 aa11.46□□□□□ -0.58
CUX1-217ENST00000558836 TIPINQ9BVW5 301 aa11.46□□□□□ -0.58
CUX1-217ENST00000558836 TARS2Q9BW92 718 aaKnown RBP11.46□□□□□ -0.58
CUX1-217ENST00000558836 TRIM31Q9BZY9 425 aa11.46□□□□□ -0.58
CUX1-217ENST00000558836 FHDC1Q9C0D6 1143 aaPredicted RBP11.46□□□□□ -0.58
CUX1-217ENST00000558836 RNF14Q9UBS8 474 aa11.46□□□□□ -0.58
CUX1-217ENST00000558836 PTPRJQ12913 1337 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 ANKRD62A6NC57 917 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 SART1O43290 800 aaKnown RBP11.45□□□□□ -0.58
CUX1-217ENST00000558836 GLRA2P23416 452 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 IRX3P78415 501 aaPredicted RBP11.45□□□□□ -0.58
CUX1-217ENST00000558836 MKRN4PQ13434 485 aaPredicted RBP11.45□□□□□ -0.58
CUX1-217ENST00000558836 HLTFQ14527 1009 aaKnown RBP eCLIP11.45□□□□□ -0.58
CUX1-217ENST00000558836 DNAJC21Q5F1R6 531 aaKnown RBP11.45□□□□□ -0.58
CUX1-217ENST00000558836 LLGL2Q6P1M3 1020 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 IFT20Q8IY31 132 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 SPIRE2Q8WWL2 714 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 KRT35Q92764 455 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 HES6Q96HZ4 224 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 PCYT2Q99447 389 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.45□□□□□ -0.581e-6■■■□□ 16.1
CUX1-217ENST00000558836 SPATC1LQ9H0A9 340 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 TMEM8AQ9HCN3 771 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 ALG6Q9Y672 507 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 GSTTP1A0A1W2PQM5 241 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 PGRMC1O00264 195 aaKnown RBP11.45□□□□□ -0.58
CUX1-217ENST00000558836 OATP04181 439 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 ERVK-9P63128 1117 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 PPATQ06203 517 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 NOL9Q5SY16 702 aaKnown RBP11.45□□□□□ -0.58
CUX1-217ENST00000558836 FAM71AQ8IYT1 594 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 CNPY4Q8N129 248 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 PBKQ96KB5 322 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 ARHGAP28Q9P2N2 729 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 SUCLA2Q9P2R7 463 aaPredicted RBP11.45□□□□□ -0.58
CUX1-217ENST00000558836 FBXO40Q9UH90 709 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 NOCTQ9UK39 431 aaKnown RBP11.45□□□□□ -0.58
CUX1-217ENST00000558836 INTUQ9ULD6 942 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 LCTP09848 1927 aa11.45□□□□□ -0.58
CUX1-217ENST00000558836 NFASCO94856 1347 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 A0A0A6YYK5 440 aaPredicted RBP11.44□□□□□ -0.58
CUX1-217ENST00000558836 K7ERI5 159 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 ECM2O94769 699 aaPredicted RBP11.44□□□□□ -0.58
CUX1-217ENST00000558836 ARIH2O95376 493 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 GGPS1O95749 300 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 CYP11B1P15538 503 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 ANXA13P27216 316 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 MFAP3P55082 362 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 BIRC3Q13489 604 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 SYCE1Q8N0S2 351 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 FAM71BQ8TC56 605 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 SCFD2Q8WU76 684 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 MFSD14AQ96MC6 490 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 ACBD3Q9H3P7 528 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 GDF3Q9NR23 364 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 TMEM59LQ9UK28 342 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 MAFBQ9Y5Q3 323 aaPredicted RBP11.44□□□□□ -0.58
CUX1-217ENST00000558836 ZNF233A6NK53 670 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 P4HA2O15460 535 aa11.44□□□□□ -0.58
CUX1-217ENST00000558836 TTI1O43156 1089 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms