RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 GPC3P51654 580 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 DRG2P55039 364 aaKnown RBP8.98□□□□□ -0.97
SPG11-209ENST00000558253 GPC5P78333 572 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 PPATQ06203 517 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 SPP2Q13103 211 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 MTMR2Q13614 643 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 ENOX2Q16206 610 aaKnown RBP8.98□□□□□ -0.97
SPG11-209ENST00000558253 SLFN12LQ6IEE8 588 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 MIS18BP1Q6P0N0 1132 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 ZNF677Q86XU0 584 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 FAM71AQ8IYT1 594 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 IQCKQ8N0W5 287 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 TMEM161BQ8NDZ6 487 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 SLC35G2Q8TBE7 412 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 TRIM11Q96F44 468 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 KRT12Q99456 494 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 TEX13BQ9BXU2 312 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 PACSIN1Q9BY11 444 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 GPR88Q9GZN0 384 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 ACAD9Q9H845 621 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 SUGCTQ9HAC7 445 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 EPB41L5Q9HCM4 733 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 UBE2TQ9NPD8 197 aaPredicted RBP8.98□□□□□ -0.97
SPG11-209ENST00000558253 KMT5AQ9NQR1 393 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 UVRAGQ9P2Y5 699 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 FBXO40Q9UH90 709 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 LCMT1Q9UIC8 334 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 CNOT7Q9UIV1 285 aaKnown RBP8.98□□□□□ -0.97
SPG11-209ENST00000558253 EMSYQ7Z589 1322 aa8.98□□□□□ -0.97
SPG11-209ENST00000558253 ZC3H4Q9UPT8 1303 aaKnown RBP8.98□□□□□ -0.97
SPG11-209ENST00000558253 COL4A5P29400 1685 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 GOLGA6CA6NDK9 693 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 GOLGA6L10A6NI86 522 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 SRRM3A6NNA2 597 aaPredicted RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 SPATA31C2B4DYI2 1134 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 DDX39AO00148 427 aaKnown RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 FOXN3O00409 490 aaPredicted RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 KRIT1O00522 736 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 SHOX2O60902 331 aaPredicted RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 LDHAP00338 332 aaKnown RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 GOLGA6DP0CG33 693 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 MYBL1P10243 752 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 MYCLP12524 364 aaPredicted RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 TAL1P17542 331 aaPredicted RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 CNGA1P29973 690 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 COPB2P35606 906 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 GGCXP38435 758 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 HSPA9P38646 679 aaKnown RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 NPTX2P47972 431 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 LMAN1P49257 510 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 GMPSP49915 693 aaPredicted RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 PEX3P56589 373 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 GUCY2DQ02846 1103 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 BAATQ14032 418 aaPredicted RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 DHX34Q14147 1143 aaKnown RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 PLS1Q14651 629 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 SNRNP35Q16560 246 aaKnown RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 ZSCAN26Q16670 478 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 XKR3Q5GH77 459 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 FAM102BQ5T8I3 360 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 PHLDB3Q6NSJ2 640 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 RUFY4Q6ZNE9 571 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 CATSPERGQ6ZRH7 1159 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 GLYCTKQ8IVS8 523 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 METTL13Q8N6R0 699 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 REPS2Q8NFH8 660 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 IL31RAQ8NI17 732 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 LNX1Q8TBB1 728 aaPredicted RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 MAIP1Q8WWC4 291 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 SEC14L1Q92503 715 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 SHC3Q92529 594 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 MS4A14Q96JA4 679 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 CEP170P1Q96L14 293 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 NT5C1BQ96P26 610 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 MPHOSPH6Q99547 160 aaKnown RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 MTFR1LQ9H019 292 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 WNT8AQ9H1J5 351 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 YY1AP1Q9H869 796 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 FAM204AQ9H8W3 233 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 ATP6V0A4Q9HBG4 840 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 JPH1Q9HDC5 661 aaPredicted RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 PDLIM7Q9NR12 457 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 GOLGA6AQ9NYA3 693 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 PARP2Q9UGN5 583 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 HACL1Q9UJ83 578 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 UTP11Q9Y3A2 253 aaKnown RBP8.97□□□□□ -0.97
SPG11-209ENST00000558253 SYNGAP1Q96PV0 1343 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 IGSF9BQ9UPX0 1349 aa8.97□□□□□ -0.97
SPG11-209ENST00000558253 ZNF233A6NK53 670 aa8.96□□□□□ -0.98
SPG11-209ENST00000558253 CCDC169A6NNP5 214 aa8.96□□□□□ -0.98
SPG11-209ENST00000558253 HMGB1P1B2RPK0 211 aaPredicted RBP8.96□□□□□ -0.98
SPG11-209ENST00000558253 AGPSO00116 658 aa8.96□□□□□ -0.98
SPG11-209ENST00000558253 PODXLO00592 558 aa8.96□□□□□ -0.98
SPG11-209ENST00000558253 BACH1O14867 736 aa8.96□□□□□ -0.98
SPG11-209ENST00000558253 SLC16A4O15374 487 aa8.96□□□□□ -0.98
SPG11-209ENST00000558253 SART1O43290 800 aaKnown RBP8.96□□□□□ -0.98
SPG11-209ENST00000558253 BUB1BO60566 1050 aaPredicted RBP8.96□□□□□ -0.98
SPG11-209ENST00000558253 CCNE2O96020 404 aa8.96□□□□□ -0.98
SPG11-209ENST00000558253 FTLP02792 175 aaPredicted RBP8.96□□□□□ -0.98
SPG11-209ENST00000558253 GLI1P08151 1106 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms