RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 ZFHX4Q86UP3 3567 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 ANK1P16157 1881 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 CCDC196A0A1B0GTZ2 297 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 ARL5CA6NH57 179 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 SLC37A4O43826 429 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 GAS2O43903 313 aaKnown RBP9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 TSPAN1O60635 241 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 ITGA4P13612 1032 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 ANP32AP39687 249 aaKnown RBP9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 PSMC5P62195 406 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 NTHL1P78549 312 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 LAMTOR4Q0VGL1 99 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 SNW1Q13573 536 aaKnown RBP9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 FUT10Q6P4F1 479 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 LILRA6Q6PI73 481 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 Q6ZUG5 572 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 SRGAP1Q7Z6B7 1085 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 GSTCDQ8NEC7 633 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 HDAC7Q8WUI4 952 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 PRPF31Q8WWY3 499 aaKnown RBP9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 PSPC1Q8WXF1 523 aaKnown RBP9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 RABGGTAQ92696 567 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 BRF1Q92994 677 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 CPB2Q96IY4 423 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 MBOAT7Q96N66 472 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 JPH2Q9BR39 696 aaPredicted RBP9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 DDX23Q9BUQ8 820 aaKnown RBP9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 APOL6Q9BWW8 343 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 SLC26A6Q9BXS9 759 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 RNF26Q9BY78 433 aaPredicted RBP9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 NXF3Q9H4D5 531 aaKnown RBP9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 PLEKHA4Q9H4M7 779 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 DHX33Q9H6R0 707 aaKnown RBP9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 SPATA6Q9NWH7 488 aaPredicted RBP9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 NCDNQ9UBB6 729 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 DPP7Q9UHL4 492 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 FBXW11Q9UKB1 542 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 VAV3Q9UKW4 847 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 SMG5Q9UPR3 1016 aaKnown RBP9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 CEP295Q9C0D2 2601 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 BAHCC1Q9P281 2608 aa9.13□□□□□ -0.95
CCDC88C-214ENST00000557507 MYH11P35749 1972 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 CYP3A7-CYP3A51PA0A087WV96 503 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 KANSL1LA0AUZ9 987 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 SPTLC1O15269 473 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 ZMYND10O75800 440 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 ERLIN2O94905 339 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 FSHRP23945 695 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 CYP3A7P24462 503 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 ATXN1P54253 815 aaKnown RBP9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 UBXN2BQ14CS0 331 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 EMC2Q15006 297 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 NPY5RQ15761 445 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 MLF2Q15773 248 aaPredicted RBP9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 ZNF528Q3MIS6 628 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 RTP2Q5QGT7 225 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 VARS2Q5ST30 1063 aaKnown RBP9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 PRSS55Q6UWB4 352 aaPredicted RBP9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 GRASPQ7Z6J2 395 aaPredicted RBP9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 FERMT3Q86UX7 667 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 SKAP1Q86WV1 359 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 RNF149Q8NC42 400 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 SLC7A3Q8WY07 619 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 CEP170P1Q96L14 293 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 FNIP2Q9P278 1114 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 FBXO4Q9UKT5 387 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 CDH7Q9ULB5 785 aa9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 RBM19Q9Y4C8 960 aaKnown RBP9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 NUP210Q8TEM1 1887 aaPredicted RBP9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 ZNF638Q14966 1978 aaKnown RBP9.12□□□□□ -0.95
CCDC88C-214ENST00000557507 DENND4CQ5VZ89 1909 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 M0R2N6 131 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 LAMTOR5O43504 91 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 C1RP00736 705 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 IFNAR1P17181 557 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 CD72P21854 359 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 TARSP26639 723 aaKnown RBP9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 RFC5P40937 340 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 QARSP47897 775 aaKnown RBP9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 NLRP5P59047 1200 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 FGD1P98174 961 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 AKAP17AQ02040 695 aaKnown RBP9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 CSTF1Q05048 431 aaKnown RBP9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 PPP2R5CQ13362 524 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 KRT32Q14532 448 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 AMHR2Q16671 573 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 USP41Q3LFD5 358 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 TSSK4Q6SA08 328 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 ZBTB44Q8NCP5 570 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 CNNM3Q8NE01 707 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 ITFG1Q8TB96 612 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 HASPINQ8TF76 798 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 FGF13Q92913 245 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 SHDQ96IW2 340 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 KXD1Q9BQD3 176 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 PAAF1Q9BRP4 392 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 BCO2Q9BYV7 579 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 EPC1Q9H2F5 836 aa9.11□□□□□ -0.95
CCDC88C-214ENST00000557507 NCOA5Q9HCD5 579 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms