RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 ITGB6P18564 788 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 ATP2B1P20020 1258 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 PMLP29590 882 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 AMPHP49418 695 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 MMP14P50281 582 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 NDUFA8P51970 172 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 NKX3-2P78367 333 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 SETQ01105 290 aaPredicted RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 MYL5Q02045 173 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 LSAMPQ13449 338 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 TESK1Q15569 626 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 WHAMMP3Q1A5X7 153 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 TUBB8Q3ZCM7 444 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 CFAP100Q494V2 611 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 MAP9Q49MG5 647 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 MCMDC2Q4G0Z9 681 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 HSP90AB2PQ58FF8 381 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 DNAJC21Q5F1R6 531 aaKnown RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 CT47A1Q5JQC4 288 aaPredicted RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 MCTP2Q6DN12 878 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 MILR1Q7Z6M3 343 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 SAPCD2Q86UD0 394 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 ZNF227Q86WZ6 799 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 VSTM4Q8IW00 320 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 ELOA2Q8IYF1 753 aaPredicted RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 TTLL6Q8N841 843 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 JMYQ8N9B5 988 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 LINC00301Q8NCQ3 95 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 NSUN7Q8NE18 718 aaKnown RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 ZNF526Q8TF50 670 aaPredicted RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 NTN5Q8WTR8 489 aaPredicted RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 CCDC34Q96HJ3 373 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 FAM227BQ96M60 508 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 USP28Q96RU2 1077 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 EIF3CQ99613 913 aaKnown RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 BAG1Q99933 345 aaPredicted RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 NAA15Q9BXJ9 866 aaKnown RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 BOLA2Q9H3K6 86 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 ZNF408Q9H9D4 720 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 ZCCHC17Q9NP64 241 aaKnown RBP3.24□□□□□ -1.89
SLIRP-208ENST00000556956 MED4Q9NPJ6 270 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 CDC23Q9UJX2 597 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 RAB21Q9UL25 225 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 RFX7Q2KHR2 1363 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 C3P01024 1663 aa3.24□□□□□ -1.89
SLIRP-208ENST00000556956 MAP3K19Q56UN5 1328 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 A0A0D9SFI3 127 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CCDC196A0A1B0GTZ2 297 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 A0A1B0GVL5 298 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CTAGE15A4D2H0 777 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CTAGE9A4FU28 777 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 PI4KAP2A4QPH2 592 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 AKR1B15C9JRZ8 316 aaPredicted RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 KRIT1O00522 736 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CUTAO60888 179 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 PPP6R2O75170 966 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 PPFIA4O75335 1185 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 GJB6O95452 261 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 PLATP00750 562 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 PLA2G1BP04054 148 aaKnown RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CCDC175P0C221 793 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 NBPF7P0C2Y1 421 aaPredicted RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CTAGE8P0CG41 777 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 ATP5JP18859 108 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 EIF2S2P20042 333 aaKnown RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 SYKP43405 635 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 SARSP49591 514 aaKnown RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 EXOSC10Q01780 885 aaKnown RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 MAP4K2Q12851 820 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 TBX2Q13207 712 aaPredicted RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 DPCR1Q3MIW9 517 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 FILIP1LQ4L180 1135 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 BEND6Q5SZJ8 279 aaPredicted RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 ANO1Q5XXA6 986 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 DPY19L2P1Q6NXN4 242 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 RSPO2Q6UXX9 243 aaPredicted RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CD300LDQ6UXZ3 194 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 KSR2Q6VAB6 950 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 MMS22LQ6ZRQ5 1243 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 ANKS3Q6ZW76 656 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CTAGE6Q86UF2 777 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 MCF2L2Q86YR7 1114 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CERS3Q8IU89 383 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 TRIM48Q8IWZ4 208 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CTAGE4Q8IX94 777 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 PPIL6Q8IXY8 311 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 FAM177A1Q8N128 213 aaPredicted RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 LRRC47Q8N1G4 583 aaKnown RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 FBXL16Q8N461 479 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 PDILTQ8N807 584 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 PI4KAP1Q8N8J0 262 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 MLKLQ8NB16 471 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 MSANTD4Q8NCY6 345 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 ST13P5Q8NFI4 369 aaPredicted RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 IL17REQ8NFR9 667 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 NPLOC4Q8TAT6 608 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 AFAP1L1Q8TED9 768 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CCDC12Q8WUD4 166 aaPredicted RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 BTN2A2Q8WVV5 523 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 DPF3Q92784 378 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms