RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 PEX10O60683 326 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 ITGB5P18084 799 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 PPATQ06203 517 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 SIAH1Q8IUQ4 282 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 IQCKQ8N0W5 287 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 STMN4Q9H169 189 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 RPAP3Q9H6T3 665 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 ZWILCHQ9H900 591 aa13.01□□□□□ -0.33
CCDC88C-211ENST00000556726 SYNGAP1Q96PV0 1343 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 ANKRD63C9JTQ0 380 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 SGK1O00141 431 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 ATP9AO75110 1047 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 ZBTB7AO95365 584 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 ZBTB16Q05516 673 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 ORC1Q13415 861 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 FBXL13Q8NEE6 735 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 ZKSCAN4Q969J2 545 aaPredicted RBP13□□□□□ -0.33
CCDC88C-211ENST00000556726 SEC16BQ96JE7 1060 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 DDX23Q9BUQ8 820 aaKnown RBP13□□□□□ -0.33
CCDC88C-211ENST00000556726 ALG13Q9NP73 1137 aaKnown RBP13□□□□□ -0.33
CCDC88C-211ENST00000556726 HOMER3Q9NSC5 361 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 VAV3Q9UKW4 847 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 WDR64B1ANS9 1081 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 K7ERI5 159 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 MYCNP04198 464 aaPredicted RBP13□□□□□ -0.33
CCDC88C-211ENST00000556726 EZRP15311 586 aaKnown RBP13□□□□□ -0.33
CCDC88C-211ENST00000556726 HNRNPH1P31943 449 aaKnown RBP13□□□□□ -0.33
CCDC88C-211ENST00000556726 FAM160B2Q86V87 743 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 KIF2BQ8N4N8 673 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 HSD17B14Q9BPX1 270 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 SEL1LQ9UBV2 794 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 SERPINA10Q9UK55 444 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 PCDHA2Q9Y5H9 948 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 IKBKGQ9Y6K9 419 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 CHD4Q14839 1912 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 IGKV6D-41A0A0C4DH26 115 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 F5H423 210 aaPredicted RBP13□□□□□ -0.33
CCDC88C-211ENST00000556726 SCYL2Q6P3W7 929 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 KDM7AQ6ZMT4 941 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 NOP9Q86U38 636 aaKnown RBP13□□□□□ -0.33
CCDC88C-211ENST00000556726 NCAPG2Q86XI2 1143 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 FMNL3Q8IVF7 1028 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 CCDC63Q8NA47 563 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 LENG9Q96B70 501 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 HVCN1Q96D96 273 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 GMCL1Q96IK5 515 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 WRNIP1Q96S55 665 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 IWS1Q96ST2 819 aa13□□□□□ -0.33
CCDC88C-211ENST00000556726 HERC5Q9UII4 1024 aaKnown RBP13□□□□□ -0.33
CCDC88C-211ENST00000556726 KRT10P13645 584 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 TKFCQ3LXA3 575 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 TMC3Q7Z5M5 1100 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 ACTRT1Q8TDG2 376 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 PCSK1NQ9UHG2 260 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 COG5Q9UP83 839 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 GLI3P10071 1580 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 TCP11X1B4DZS4 312 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 GOLGA8RI6L899 631 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 INO80B-WBP1J3KQ70 363 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 NOP56O00567 594 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 RTN2O75298 545 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 PSMD10O75832 226 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 KRT1P04264 644 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 PLS3P13797 630 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 RRM1P23921 792 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 RPL21P46778 160 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 RARRES1P49788 294 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 MAPK7Q13164 816 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 QPCTQ16769 361 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 BSPRYQ5W0U4 402 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 KIRREL3Q8IZU9 778 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 ATP8B4Q8TF62 1192 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 CHMP6Q96FZ7 201 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 INO80BQ9C086 356 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 POLR3FQ9H1D9 316 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 SAYSD1Q9NPB0 183 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 OLFML3Q9NRN5 406 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 RAB20Q9NX57 234 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 CTNNAL1Q9UBT7 734 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 FEM1BQ9UK73 627 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 SPDYE2BA6NHP3 402 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 FAM107AO95990 144 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 SPDYE6P0CI01 402 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 BRAFP15056 766 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 UGCGQ16739 394 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 ZNF449Q6P9G9 518 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 ZNF662Q6ZS27 426 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 C15orf52Q6ZUT6 534 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 CTAGE3PQ8IX95 158 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 LRRC34Q8IZ02 419 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 NLRP4Q96MN2 994 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 MSTO1Q9BUK6 570 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 FGFR1OP2Q9NVK5 253 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 PARP2Q9UGN5 583 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 TMX2Q9Y320 296 aa12.99□□□□□ -0.33
CCDC88C-211ENST00000556726 CACNA1SQ13698 1873 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 TULP2O00295 520 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 MAP3K6O95382 1288 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 MAP2K2P36507 400 aa12.98□□□□□ -0.33
CCDC88C-211ENST00000556726 HSPA9P38646 679 aaKnown RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms