RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 RRAGBQ5VZM2 374 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 ZBTB33Q86T24 672 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 PDILTQ8N807 584 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 CEP120Q8N960 986 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 TMEM161BQ8NDZ6 487 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 CNNM3Q8NE01 707 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 URGCPQ8TCY9 931 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 AUTS2Q8WXX7 1259 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 ZBTB45Q96K62 511 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 ZNF396Q96N95 335 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 ACO2Q99798 780 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 NTPCRQ9BSD7 190 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 ZHX3Q9H4I2 956 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 CLDND1Q9NY35 253 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 GDAQ9Y2T3 454 aa12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 PRG3Q9Y2Y8 225 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-208ENST00000554165 MYH11P35749 1972 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 MYH15Q9Y2K3 1946 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 PHLPP2Q6ZVD8 1323 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 BDP1A6H8Y1 2624 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 MYMKA6NI61 221 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 DLL1O00548 723 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 ABLIM1O14639 778 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 INPPL1O15357 1258 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 RECQL4O94761 1208 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 MAPTP10636 758 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 DDIT3P35638 169 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 COL19A1Q14993 1142 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 CTC1Q2NKJ3 1217 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 TJAP1Q5JTD0 557 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 DYMQ7RTS9 669 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 COLGALT2Q8IYK4 626 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 KCTD17Q8N5Z5 321 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 VN1R2Q8NFZ6 395 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 SPIRE2Q8WWL2 714 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 LARP4BQ92615 738 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 IGSF21Q96ID5 467 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 TCF25Q9BQ70 676 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 TIPINQ9BVW5 301 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 IKZF4Q9H2S9 585 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 TMEM134Q9H6X4 195 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 PTPRHQ9HD43 1115 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 COG5Q9UP83 839 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 GIT1Q9Y2X7 761 aa12.74□□□□□ -0.37
CCDC88C-208ENST00000554165 PTGESO14684 152 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 NRP1O14786 923 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 MEFVO15553 781 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 TBX10O75333 385 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 FAM13AO94988 1023 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 GLP2RO95838 553 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 KRT18P05783 430 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 HARSP12081 509 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 IGFBP6P24592 240 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 NMT1P30419 496 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 PPM1AP35813 382 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 OR1G1P47890 313 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 OSTNP61366 133 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 KRT17Q04695 432 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 UBE3AQ05086 875 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 DSC1Q08554 894 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 ADAM15Q13444 863 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 CSPP1Q1MSJ5 1256 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 SEZ6Q53EL9 994 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 AXDND1Q5T1B0 1012 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 SHC4Q6S5L8 630 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 TAS1R1Q7RTX1 841 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 TMC7Q7Z402 723 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 MYCT1Q8N699 235 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 STAMQ92783 540 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 PABPC5Q96DU9 382 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 FIZ1Q96SL8 496 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 PAAF1Q9BRP4 392 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 HAPLN2Q9GZV7 340 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 CDT1Q9H211 546 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 TLE6Q9H808 572 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 C17orf75Q9HAS0 396 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 UBN1Q9NPG3 1134 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 ENTPD7Q9NQZ7 604 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 MARCH5Q9NX47 278 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 KCND2Q9NZV8 630 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 PUF60Q9UHX1 559 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 LZTS1Q9Y250 596 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 TNFSF13BQ9Y275 285 aa12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 RBM19Q9Y4C8 960 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 MORC2Q9Y6X9 1032 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-208ENST00000554165 YEATS4O95619 227 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 BRD1O95696 1058 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 PROZP22891 400 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 ZNF131P52739 623 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 NCKAP1LP55160 1127 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 ZNF568Q3ZCX4 644 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 ZC2HC1CQ53FD0 456 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 HAUS6Q7Z4H7 955 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 VPS52Q8N1B4 723 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 TMEM130Q8N3G9 435 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 ADAMTS19Q8TE59 1207 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 DDX12PQ92771 950 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 DNAJC19Q96DA6 116 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 TMEM169Q96HH4 297 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms