RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 DLGAP2Q9P1A6 1054 aa13.17□□□□□ -0.3
SRP54-203ENST00000553544 OTOGLQ3ZCN5 2332 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 ANHXE9PGG2 379 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 B4GALT3O60512 393 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 KINO60870 393 aaKnown RBP13.16□□□□□ -0.3
SRP54-203ENST00000553544 NR1I2O75469 434 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 RFPL2O75678 378 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 SPATA31D3P0C874 917 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 MYBP10242 640 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 GLUD2P49448 558 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 AFF1P51825 1210 aaKnown RBP13.16□□□□□ -0.3
SRP54-203ENST00000553544 SPIRE1Q08AE8 756 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 RSPO4Q2I0M5 234 aaPredicted RBP13.16□□□□□ -0.3
SRP54-203ENST00000553544 SPATA31D4Q6ZUB0 917 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 PALB2Q86YC2 1186 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 CCDC83Q8IWF9 413 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 DIS3L2Q8IYB7 885 aaKnown RBP13.16□□□□□ -0.3
SRP54-203ENST00000553544 GPR161Q8N6U8 529 aaKnown RBP13.16□□□□□ -0.3
SRP54-203ENST00000553544 CNNM3Q8NE01 707 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 SH2D3AQ9BRG2 576 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 HERC2P3Q9BVR0 1158 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 NT5C3AQ9H0P0 336 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 IFT122Q9HBG6 1241 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 AGPAT5Q9NUQ2 364 aa13.16□□□□□ -0.3
SRP54-203ENST00000553544 ZFP37Q9Y6Q3 630 aaPredicted RBP13.16□□□□□ -0.3
SRP54-203ENST00000553544 TMEM150BA6NC51 233 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 WNT7AO00755 349 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 PAPLNO95428 1278 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 SRGAP2CP0DJJ0 459 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 OR1G1P47890 313 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 QARSP47897 775 aaKnown RBP13.15□□□□□ -0.3
SRP54-203ENST00000553544 STARD6P59095 220 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 PSMC5P62195 406 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 EPHA7Q15375 998 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 ZNF528Q3MIS6 628 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 VARS2Q5ST30 1063 aaKnown RBP13.15□□□□□ -0.3
SRP54-203ENST00000553544 ANO5Q75V66 913 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 SRGAP1Q7Z6B7 1085 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 EXOC8Q8IYI6 725 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 COLGALT2Q8IYK4 626 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 SLFN12Q8IYM2 578 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 SUMF1Q8NBK3 374 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 ZNF707Q96C28 371 aaPredicted RBP13.15□□□□□ -0.3
SRP54-203ENST00000553544 CNTNAP3BQ96NU0 1288 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 CNTNAP3Q9BZ76 1288 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 PRKD2Q9BZL6 878 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 UPF2Q9HAU5 1272 aaKnown RBP13.15□□□□□ -0.3
SRP54-203ENST00000553544 SH2B1Q9NRF2 756 aaPredicted RBP13.15□□□□□ -0.3
SRP54-203ENST00000553544 ZDHHC7Q9NXF8 308 aa13.15□□□□□ -0.3
SRP54-203ENST00000553544 WRAP73Q9P2S5 460 aaPredicted RBP13.15□□□□□ -0.3
SRP54-203ENST00000553544 PRG3Q9Y2Y8 225 aaPredicted RBP13.15□□□□□ -0.3
SRP54-203ENST00000553544 P4HBP07237 508 aaKnown RBP13.14□□□□□ -0.31
SRP54-203ENST00000553544 ITGA4P13612 1032 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 GLULP15104 373 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 NCLP19338 710 aaKnown RBP13.14□□□□□ -0.31
SRP54-203ENST00000553544 HOXA11P31270 313 aaPredicted RBP13.14□□□□□ -0.31
SRP54-203ENST00000553544 DSG1Q02413 1049 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 HTR4Q13639 388 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 TRIM29Q14134 588 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 C4orf19Q8IY42 314 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 PJA1Q8NG27 643 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 PRPF31Q8WWY3 499 aaKnown RBP13.14□□□□□ -0.31
SRP54-203ENST00000553544 ATRIPQ8WXE1 791 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 MTMR9Q96QG7 549 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 COLEC11Q9BWP8 271 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 BCO2Q9BYV7 579 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.14□□□□□ -0.31
SRP54-203ENST00000553544 CHST7Q9NS84 486 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 COL4A3BPQ9Y5P4 624 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 NUMBLQ9Y6R0 609 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 GPR179Q6PRD1 2367 aa13.14□□□□□ -0.31
SRP54-203ENST00000553544 KANSL1LA0AUZ9 987 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 TGM5O43548 720 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 DKC1O60832 514 aaKnown RBP eCLIP13.13□□□□□ -0.31
SRP54-203ENST00000553544 BAG4O95429 457 aaKnown RBP13.13□□□□□ -0.31
SRP54-203ENST00000553544 EFEMP2O95967 443 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 FOSBP53539 338 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 GPC5P78333 572 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 HMGN5P82970 282 aaKnown RBP13.13□□□□□ -0.31
SRP54-203ENST00000553544 NCBP1Q09161 790 aaKnown RBP13.13□□□□□ -0.31
SRP54-203ENST00000553544 UBXN11Q5T124 520 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 GET4Q7L5D6 327 aaPredicted RBP13.13□□□□□ -0.31
SRP54-203ENST00000553544 GPR65Q8IYL9 337 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 RNF168Q8IYW5 571 aaPredicted RBP13.13□□□□□ -0.31
SRP54-203ENST00000553544 MAML2Q8IZL2 1156 aaPredicted RBP13.13□□□□□ -0.31
SRP54-203ENST00000553544 FBXO18Q8NFZ0 1043 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 SLC7A3Q8WY07 619 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 SECISBP2LQ93073 1101 aaKnown RBP13.13□□□□□ -0.31
SRP54-203ENST00000553544 FOXQ1Q9C009 403 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 SPATA6Q9NWH7 488 aaPredicted RBP13.13□□□□□ -0.31
SRP54-203ENST00000553544 MARCH5Q9NX47 278 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 NCDNQ9UBB6 729 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 FBXO4Q9UKT5 387 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 CACNA1IQ9P0X4 2223 aa13.13□□□□□ -0.31
SRP54-203ENST00000553544 ACACBO00763 2458 aa13.12□□□□□ -0.31
SRP54-203ENST00000553544 ARL5CA6NH57 179 aa13.12□□□□□ -0.31
SRP54-203ENST00000553544 POTEMA6NI47 508 aa13.12□□□□□ -0.31
SRP54-203ENST00000553544 PRR5-ARHGAP8B1AHC4 643 aa13.12□□□□□ -0.31
SRP54-203ENST00000553544 SPTLC1O15269 473 aa13.12□□□□□ -0.31
SRP54-203ENST00000553544 ASAP2O43150 1006 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms