RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CYP2W1Q8TAV3 490 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 GRAPLQ8TC17 118 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 NRG4Q8WWG1 115 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 PAIP2Q9BPZ3 127 aaKnown RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 TBC1D10AQ9BXI6 508 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 TRIM7Q9C029 511 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 C12orf65Q9H3J6 166 aaKnown RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 DENND2DQ9H6A0 471 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 PSTPIP2Q9H939 334 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 PAPOLBQ9NRJ5 636 aaKnown RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 ETAA1Q9NY74 926 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 TRAF3IP3Q9Y228 551 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 ZBTB12Q9Y330 459 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 BZW2Q9Y6E2 419 aaKnown RBP5.21□□□□□ -1.58
LIMA1-214ENST00000552783 NCANO14594 1321 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 ZMYM2Q9UBW7 1377 aa5.21□□□□□ -1.58
LIMA1-214ENST00000552783 COL16A1Q07092 1604 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 MAST2Q6P0Q8 1798 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 SMCHD1A6NHR9 2005 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 USP17L10C9JJH3 530 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 SNUPNO95149 360 aaKnown RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 GDF11O95390 407 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 TMEM253P0C7T8 217 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 AKR1B1P15121 316 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 IVDP26440 423 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 STAT1P42224 750 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 CLK2P49760 499 aaKnown RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 DRG2P55039 364 aaKnown RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 NPEPPSP55786 919 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 DLG4P78352 724 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 SPIRE1Q08AE8 756 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 CERKLQ49MI3 558 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 KHDC1Q4VXA5 237 aaKnown RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 MFSD5Q6N075 450 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 FOXR2Q6PJQ5 311 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 ADGRF4Q8IZF3 695 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 PIGOQ8TEQ8 1089 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 CTNNBL1Q8WYA6 563 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 PRR11Q96HE9 360 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 PCDHB18PQ96TA0 734 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 PLCD4Q9BRC7 762 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 TMEM109Q9BVC6 243 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 OCEL1Q9H607 264 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 RNPEPL1Q9HAU8 725 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 CHST7Q9NS84 486 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 RGL1Q9NZL6 768 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 PCYOX1Q9UHG3 505 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 ZBTB21Q9ULJ3 1066 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 C2CD2Q9Y426 696 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 PCDHA1Q9Y5I3 950 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 ROBO3Q96MS0 1386 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 FAM187AA6NFU0 413 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 O00370 1275 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 CLDN3O15551 220 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 SMIM24O75264 130 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 GCNT3O95395 438 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 FTLP02792 175 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 FESP07332 822 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 CALB2P22676 271 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 BRD2P25440 801 aaKnown RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 COILP38432 576 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 PAPOLAP51003 745 aaKnown RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 ATP11AP98196 1134 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 DHX34Q14147 1143 aaKnown RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 PLEKHG4Q58EX7 1191 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 SPDYCQ5MJ68 293 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 HYIQ5T013 277 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 FAM182AQ5T1J6 154 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 LLGL2Q6P1M3 1020 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 PHLDB2Q86SQ0 1253 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 NEDD1Q8NHV4 660 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 RBM17Q96I25 401 aaKnown RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 C9orf72Q96LT7 481 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 NUDCD1Q96RS6 583 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 MIPEPQ99797 713 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 DDX50Q9BQ39 737 aaKnown RBP5.2□□□□□ -1.58
LIMA1-214ENST00000552783 DNAJC18Q9H819 358 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 DLGAP2Q9P1A6 1054 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 CTTNBP2NLQ9P2B4 639 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 SERPINB13Q9UIV8 391 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 NAALADL1Q9UQQ1 740 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 IRS2Q9Y4H2 1338 aa5.2□□□□□ -1.58
LIMA1-214ENST00000552783 GPR75-ASB3A0A0A6YYF3 556 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 GOLGA6L10A0A0M3HER8 536 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 ESYT2A0FGR8 921 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 DDX39AO00148 427 aaKnown RBP5.19□□□□□ -1.58
LIMA1-214ENST00000552783 TBCAO75347 108 aaKnown RBP5.19□□□□□ -1.58
LIMA1-214ENST00000552783 CFBP00751 764 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 PYGLP06737 847 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 HOXA13P31271 388 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-214ENST00000552783 PCK1P35558 622 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 RPS6KA3P51812 740 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 LACTBP83111 547 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-214ENST00000552783 C2CD6Q53TS8 623 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 TMEM154Q6P9G4 183 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 SLC30A9Q6PML9 568 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 DSTYKQ6XUX3 929 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 ARHGEF19Q8IW93 802 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 STK32AQ8WU08 396 aa5.19□□□□□ -1.58
LIMA1-214ENST00000552783 TEKT4Q8WW24 435 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms