RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 APOBEC3HQ6NTF7 200 aaKnown RBP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 C10orf71Q711Q0 1435 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 ZNF720Q7Z2F6 126 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 PNMA8AQ86V59 439 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 TPH2Q8IWU9 490 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 DHX37Q8IY37 1157 aaKnown RBP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 ANKS4BQ8N8V4 417 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 MGARPQ8TDB4 240 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CD101Q93033 1021 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 MIEF2Q96C03 454 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 HOOK2Q96ED9 719 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 AGPAT1Q99943 283 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 ZSWIM1Q9BR11 485 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 POLR3CQ9BUI4 534 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 SLC4A5Q9BY07 1137 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CCDC113Q9H0I3 377 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 VEZTQ9HBM0 779 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CTTNBP2NLQ9P2B4 639 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CTNNAL1Q9UBT7 734 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CNOT7Q9UIV1 285 aaKnown RBP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 DDTLA6NHG4 134 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 RASGRF2O14827 1237 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 KIF1CO43896 1103 aaKnown RBP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 TBC1D12O60347 775 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 AGTP01019 485 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 EZRP15311 586 aaKnown RBP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CHRNB2P17787 502 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CHRNA3P32297 505 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CHKAP35790 457 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 HADHBP55084 474 aaKnown RBP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 MYL7Q01449 175 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 PPP3CAQ08209 521 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 TCP10Q12799 353 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 NFIL3Q16649 462 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 C1orf220Q5T0J3 134 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 C6orf118Q5T5N4 469 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 VSTM1Q6UX27 236 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 FAM196AQ6ZSG2 479 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 OTOP1Q7RTM1 612 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CROCCP2Q86T23 111 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CCDC25Q86WR0 208 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 RPUSD2Q8IZ73 545 aaKnown RBP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 DAW1Q8N136 415 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 ANKLE1Q8NAG6 615 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 PLEKHO2Q8TD55 490 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 PRCCQ92733 491 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 ART4Q93070 314 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 MKL1Q969V6 931 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 ELMO3Q96BJ8 720 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 FAM20AQ96MK3 541 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 ZBED2Q9BTP6 218 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 MKNK1Q9BUB5 465 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 TMEM109Q9BVC6 243 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 ATP6V0A4Q9HBG4 840 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 FGFR1OP2Q9NVK5 253 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 PNMA3Q9UL41 463 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 SYNGAP1Q96PV0 1343 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 TCP11X1B4DZS4 312 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 SGPL1O95470 568 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 GH1P01241 217 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 GSTA1P08263 222 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 RARGP13631 454 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 GBP1P32455 592 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 COILP38432 576 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-212ENST00000552491 MMP14P50281 582 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 UBXN2AP68543 259 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 ADCY2Q08462 1091 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 BFSP1Q12934 665 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 CYP1B1Q16678 543 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 GALNTL6Q49A17 601 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 TRAPPC3LQ5T215 181 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 C11orf63Q6NUN7 778 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 EP400NLQ6ZTU2 488 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 SH3BP5LQ7L8J4 393 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 FMNL3Q8IVF7 1028 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 KIF2BQ8N4N8 673 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 AGAP11Q8TF27 550 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 THOC1Q96FV9 657 aaKnown RBP5.82□□□□□ -1.48
LIMA1-212ENST00000552491 PWWP2AQ96N64 755 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 HERPUD2Q9BSE4 406 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 AMNQ9BXJ7 453 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 CDC42EP4Q9H3Q1 356 aaKnown RBP5.82□□□□□ -1.48
LIMA1-212ENST00000552491 PCIF1Q9H4Z3 704 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 PARVGQ9HBI0 331 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 UBE2TQ9NPD8 197 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-212ENST00000552491 KCNQ5Q9NR82 932 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 DNAJC17Q9NVM6 304 aaKnown RBP5.82□□□□□ -1.48
LIMA1-212ENST00000552491 TRIM33Q9UPN9 1127 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 CEP83Q9Y592 693 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 SPATA31A6Q5VVP1 1343 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 EMSYQ7Z589 1322 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 QSER1Q2KHR3 1735 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 F5H6K3 240 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 PSMD10O75832 226 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 GDF11O95390 407 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 ACSL3O95573 720 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 NDUFB10O96000 172 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 CALCAP01258 141 aa5.82□□□□□ -1.48
LIMA1-212ENST00000552491 CETPP11597 493 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms