RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 LETM2Q2VYF4 491 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 LLGL2Q6P1M3 1020 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 CATSPER4Q7RTX7 472 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 NEK8Q86SG6 692 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 DDX53Q86TM3 631 aaKnown RBP8.53□□□□□ -1.04
NEK3-201ENST00000550331 ADSSL1Q8N142 457 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 VPS52Q8N1B4 723 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 TMEM105Q8N8V8 129 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 KREMEN2Q8NCW0 462 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 NKD2Q969F2 451 aaPredicted RBP8.53□□□□□ -1.04
NEK3-201ENST00000550331 PGBD4Q96DM1 585 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 IGSF21Q96ID5 467 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 NLRP4Q96MN2 994 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 AIFM3Q96NN9 605 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 PHF20Q9BVI0 1012 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 ZBP1Q9H171 429 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 IFT122Q9HBG6 1241 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 AGPAT5Q9NUQ2 364 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 TBC1D13Q9NVG8 400 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 DZANK1Q9NVP4 752 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 STK39Q9UEW8 545 aa8.53□□□□□ -1.04
NEK3-201ENST00000550331 EP300Q09472 2414 aaPredicted RBP8.53□□□□□ -1.04
NEK3-201ENST00000550331 WDR87Q6ZQQ6 2873 aa8.52□□□□□ -1.04
NEK3-201ENST00000550331 DNAH14Q0VDD8 3507 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 CCDC194A0A1B0GVG4 234 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 EML1O00423 815 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 GAS2O43903 313 aaKnown RBP8.52□□□□□ -1.05
NEK3-201ENST00000550331 OFD1O75665 1012 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 GALTP07902 379 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 RFC5P40937 340 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 MTHFRP42898 656 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 STK3Q13188 491 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 MTMR3Q13615 1198 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 INF2Q27J81 1249 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 NOMO2Q5JPE7 1267 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 PLA2G4FQ68DD2 849 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 SRGAP1Q7Z6B7 1085 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 TMEM173Q86WV6 379 aaPredicted RBP8.52□□□□□ -1.05
NEK3-201ENST00000550331 KSR1Q8IVT5 923 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 C4orf19Q8IY42 314 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 UBALD2Q8IYN6 164 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 URGCPQ8TCY9 931 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 TCP11Q8WWU5 503 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 PSPC1Q8WXF1 523 aaKnown RBP8.52□□□□□ -1.05
NEK3-201ENST00000550331 LPPQ93052 612 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 SH2D3AQ9BRG2 576 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 APOL5Q9BWW9 433 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 DHX33Q9H6R0 707 aaKnown RBP8.52□□□□□ -1.05
NEK3-201ENST00000550331 NRDE2Q9H7Z3 1164 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 TSHZ2Q9NRE2 1034 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 PDRG1Q9NUG6 133 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 KCNJ14Q9UNX9 436 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 SORCS3Q9UPU3 1222 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 PCDHB2Q9Y5E7 798 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 COL4A3BPQ9Y5P4 624 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 CNTNAP2Q9UHC6 1331 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 ZNF292O60281 2723 aa8.52□□□□□ -1.05
NEK3-201ENST00000550331 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.51□□□□□ -1.05
NEK3-201ENST00000550331 MEIS3P2A8K0S8 358 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 NT5C1B-RDH14C9J2C7 533 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 ASAP2O43150 1006 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 CXCL14O95715 111 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 YWHABP31946 246 aaKnown RBP8.51□□□□□ -1.05
NEK3-201ENST00000550331 CA8P35219 290 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 NPEPPSP55786 919 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 RNASELQ05823 741 aaKnown RBP8.51□□□□□ -1.05
NEK3-201ENST00000550331 SCRN1Q12765 414 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 PCBP1Q15365 356 aaKnown RBP eCLIP8.51□□□□□ -1.05
NEK3-201ENST00000550331 EPHA7Q15375 998 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 E2F4Q16254 413 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 KIAA1841Q6NSI8 718 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 PIK3AP1Q6ZUJ8 805 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 OTUD6AQ7L8S5 288 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 MRPL10Q7Z7H8 261 aaKnown RBP8.51□□□□□ -1.05
NEK3-201ENST00000550331 PPFIBP1Q86W92 1011 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 SLFN12Q8IYM2 578 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 TMEM87AQ8NBN3 555 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 CNNM3Q8NE01 707 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 CEP170P1Q96L14 293 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 ZFP42Q96MM3 310 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 LXNQ9BS40 222 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 TMEM175Q9BSA9 504 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 SLKQ9H2G2 1235 aaPredicted RBP8.51□□□□□ -1.05
NEK3-201ENST00000550331 POMKQ9H5K3 350 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 UBN1Q9NPG3 1134 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 KANSL3Q9P2N6 904 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 WRAP73Q9P2S5 460 aaPredicted RBP8.51□□□□□ -1.05
NEK3-201ENST00000550331 USTQ9Y2C2 406 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 INPP5FQ9Y2H2 1132 aa8.51□□□□□ -1.05
NEK3-201ENST00000550331 C2CD4DB7Z1M9 353 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 CCNT1O60563 726 aaKnown RBP8.5□□□□□ -1.05
NEK3-201ENST00000550331 PFKFB2O60825 505 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 BRD1O95696 1058 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 NCLP19338 710 aaKnown RBP8.5□□□□□ -1.05
NEK3-201ENST00000550331 SLC11A1P49279 550 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 WNT7BP56706 349 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 SPIRE1Q08AE8 756 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 LAMTOR4Q0VGL1 99 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 EMC2Q15006 297 aa8.5□□□□□ -1.05
NEK3-201ENST00000550331 PTPN14Q15678 1187 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms