RNA–Protein interactions for RNA: ENST00000549655.5

BRF1-215, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, human

TSL 2

Gene BRF1, Length 1,962 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRF1-215	ENST00000549655	TUBB4B	P68371	445 aa		20.71	■□□□□ 0.91
BRF1-215	ENST00000549655	LAMTOR4	Q0VGL1	99 aa		20.71	■□□□□ 0.91
BRF1-215	ENST00000549655	LAMC2	Q13753	1193 aa		20.71	■□□□□ 0.91
BRF1-215	ENST00000549655	ZNF467	Q7Z7K2	595 aa	Predicted RBP	20.71	■□□□□ 0.91
BRF1-215	ENST00000549655	TAS1R2	Q8TE23	839 aa		20.71	■□□□□ 0.91
BRF1-215	ENST00000549655	KAT5	Q92993	513 aa		20.71	■□□□□ 0.91
BRF1-215	ENST00000549655	CAPZA3	Q96KX2	299 aa		20.71	■□□□□ 0.91
BRF1-215	ENST00000549655	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	20.71	■□□□□ 0.91
BRF1-215	ENST00000549655	ANKFY1	Q9P2R3	1169 aa		20.71	■□□□□ 0.91
BRF1-215	ENST00000549655	ZNF185	O15231	689 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	HBP1	O60381	514 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	PALM	O75781	387 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	MATR3	P43243	847 aa	Known RBP eCLIP	20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	MXD4	Q14582	209 aa	Predicted RBP	20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	PSMD6	Q15008	389 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	CST9	Q5W186	159 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	DPP9	Q86TI2	863 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	PPM1K	Q8N3J5	372 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	TRAPPC12	Q8WVT3	735 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	RAB20	Q9NX57	234 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	ATP8B3	O60423	1300 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655		A0A0B4J269	797 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	GH1	P01241	217 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	H2AFZ	P0C0S5	128 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	SRGAP2C	P0DJJ0	459 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	PRLR	P16471	622 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	EFNA5	P52803	228 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	FAM110C	Q1W6H9	321 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	MAMDC4	Q6UXC1	1216 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	CRELD2	Q6UXH1	353 aa	Predicted RBP	20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	H2AFV	Q71UI9	128 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	MMS19	Q96T76	1030 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	MSTO1	Q9BUK6	570 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	ERAP1	Q9NZ08	941 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	PCDHGC5	Q9Y5F6	944 aa		20.7	■□□□□ 0.9
BRF1-215	ENST00000549655	RBM47	A0AV96	593 aa	Known RBP	20.69	■□□□□ 0.9
BRF1-215	ENST00000549655	MFAP3	P55082	362 aa		20.69	■□□□□ 0.9
BRF1-215	ENST00000549655	CKAP4	Q07065	602 aa	Known RBP	20.69	■□□□□ 0.9
BRF1-215	ENST00000549655	GRB14	Q14449	540 aa		20.69	■□□□□ 0.9
BRF1-215	ENST00000549655	RNF149	Q8NC42	400 aa		20.69	■□□□□ 0.9
BRF1-215	ENST00000549655	KREMEN1	Q96MU8	473 aa		20.69	■□□□□ 0.9
BRF1-215	ENST00000549655	FNBP1	Q96RU3	617 aa		20.69	■□□□□ 0.9
BRF1-215	ENST00000549655	JPH2	Q9BR39	696 aa	Predicted RBP	20.69	■□□□□ 0.9
BRF1-215	ENST00000549655	KATNBL1	Q9H079	304 aa		20.69	■□□□□ 0.9
BRF1-215	ENST00000549655	RNPEP	Q9H4A4	650 aa		20.69	■□□□□ 0.9
BRF1-215	ENST00000549655	SUCLA2	Q9P2R7	463 aa	Predicted RBP	20.69	■□□□□ 0.9
BRF1-215	ENST00000549655	INTU	Q9ULD6	942 aa		20.69	■□□□□ 0.9
BRF1-215	ENST00000549655	NCK2	O43639	380 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	SNAI1	O95863	264 aa	Predicted RBP	20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	LDHA	P00338	332 aa	Known RBP	20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	TNFAIP3	P21580	790 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	CLDN10	P78369	228 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	CDCA2	Q69YH5	1023 aa	Predicted RBP	20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	NFRKB	Q6P4R8	1299 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	HELQ	Q8TDG4	1101 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	ZNF516	Q92618	1163 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	NT5C1B	Q96P26	610 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	OSBPL9	Q96SU4	736 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	TLR10	Q9BXR5	811 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	PARD6B	Q9BYG5	372 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	HYOU1	Q9Y4L1	999 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	USP8	P40818	1118 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	ADCYAP1R1	P41586	468 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	CLCN6	P51797	869 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	WNT7B	P56706	349 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	ZBTB41	Q5SVQ8	909 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	ZPBP2	Q6X784	338 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	PLEKHH3	Q7Z736	793 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	RHPN2	Q8IUC4	686 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	PPTC7	Q8NI37	304 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	CAGE1	Q8TC20	777 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	FAM84A	Q96KN4	292 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	AGPAT1	Q99943	283 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	CCDC113	Q9H0I3	377 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	PDE11A	Q9HCR9	933 aa		20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	ARGLU1	Q9NWB6	273 aa	Predicted RBP	20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	RBAK	Q9NYW8	714 aa	Predicted RBP	20.68	■□□□□ 0.9
BRF1-215	ENST00000549655	ADGRA2	Q96PE1	1338 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	GRID2IP	A4D2P6	1211 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	TTLL13P	A6NNM8	815 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	MSC	O60682	206 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	LGALS2	P05162	132 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	TCP1	P17987	556 aa	Known RBP	20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	TNNI1	P19237	187 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	MAPK4	P31152	587 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	NOP2	P46087	812 aa	Known RBP	20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	PRPF4B	Q13523	1007 aa	Known RBP	20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	LMBRD2	Q68DH5	695 aa	Predicted RBP	20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	EFCAB12	Q6NXP0	572 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	C15orf39	Q6ZRI6	1047 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	ZBTB8OS	Q8IWT0	167 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	FAM71A	Q8IYT1	594 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	NOA1	Q8NC60	698 aa	Known RBP	20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	COG1	Q8WTW3	980 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	SLC20A1	Q8WUM9	679 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	MAML3	Q96JK9	1138 aa		20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	MRPL4	Q9BYD3	311 aa	Known RBP	20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	SEPT11	Q9NVA2	429 aa	Known RBP	20.67	■□□□□ 0.9
BRF1-215	ENST00000549655	TMCO5B	A8MYB1	307 aa		20.66	■□□□□ 0.9
BRF1-215	ENST00000549655	PDE2A	O00408	941 aa	Predicted RBP	20.66	■□□□□ 0.9

Retrieved 100 of 20,778 RNA–protein pairs in 27 ms