RNA–Protein interactions for RNA: ENST00000543542.1

LTBR-212, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 367 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-212ENST00000543542 PCDHA5Q9Y5H7 936 aa6.91□□□□□ -1.3
LTBR-212ENST00000543542 UBE4BO95155 1302 aa6.91□□□□□ -1.3
LTBR-212ENST00000543542 CLIC2O15247 247 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 RHOBTB3O94955 611 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 EDN1P05305 212 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 MCF2P10911 925 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 MYOGP15173 224 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 GATMP50440 423 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 FAM189BP81408 668 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 KCNA1Q09470 495 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 STK4Q13043 487 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 SEZ6Q53EL9 994 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 UBXN11Q5T124 520 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 ZNF658Q5TYW1 1059 aaPredicted RBP6.9□□□□□ -1.3
LTBR-212ENST00000543542 RASIP1Q5U651 963 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 PPP2R2DQ66LE6 453 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 FAM109BQ6ICB4 259 aaPredicted RBP6.9□□□□□ -1.3
LTBR-212ENST00000543542 HS2ST1Q7LGA3 356 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 ELOA2Q8IYF1 753 aaPredicted RBP6.9□□□□□ -1.3
LTBR-212ENST00000543542 GLIS3Q8NEA6 775 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 ZNF507Q8TCN5 953 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 GPT2Q8TD30 523 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 SYAP1Q96A49 352 aaPredicted RBP6.9□□□□□ -1.3
LTBR-212ENST00000543542 FAM212AQ96EL1 285 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 ACAP3Q96P50 834 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 FIZ1Q96SL8 496 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 MRPL9Q9BYD2 267 aaKnown RBP6.9□□□□□ -1.3
LTBR-212ENST00000543542 PBX4Q9BYU1 374 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 TMEM117Q9H0C3 514 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 GBP3Q9H0R5 595 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 CDT1Q9H211 546 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 NKX2-4Q9H2Z4 354 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 PRO3102Q9H379 93 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 CLSTN2Q9H4D0 955 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 PCIF1Q9H4Z3 704 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 TOPORSQ9NS56 1045 aaPredicted RBP6.9□□□□□ -1.3
LTBR-212ENST00000543542 KLK14Q9P0G3 267 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 AGO2Q9UKV8 859 aaKnown RBP6.9□□□□□ -1.3
LTBR-212ENST00000543542 PCDHA11Q9Y5I1 949 aa6.9□□□□□ -1.3
LTBR-212ENST00000543542 TISP43B9A030 160 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 ANKRD63C9JTQ0 380 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 OGTO15294 1046 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 CALUO43852 315 aaPredicted RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 ZNF623O75123 536 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 PPP1R37O75864 691 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 DGKIO75912 1065 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 RECQL4O94761 1208 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 LDHAP00338 332 aaKnown RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 POMCP01189 267 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 PIGRP01833 764 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 CA3P07451 260 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 DNAJB2P25686 324 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 PBX2P40425 430 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 MLH1P40692 756 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 GRM5P41594 1212 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 CYP2J2P51589 502 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 SMAD3P84022 425 aaKnown RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 PPP2R3AQ06190 1150 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 MCL1Q07820 350 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 HSP90AA2PQ14568 343 aaPredicted RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 KYAT1Q16773 422 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 KNOP1Q1ED39 458 aaKnown RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 LRIT3Q3SXY7 679 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 NOMO2Q5JPE7 1267 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 HABP4Q5JVS0 413 aaKnown RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 KLHL10Q6JEL2 608 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 EPM2AIP1Q7L775 607 aaPredicted RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 MRPL10Q7Z7H8 261 aaKnown RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 SMYD4Q8IYR2 804 aaPredicted RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 CMTR2Q8IYT2 770 aaKnown RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 LRRC43Q8N309 656 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 CEP120Q8N960 986 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 KIAA0895Q8NCT3 520 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 SMG8Q8ND04 991 aaKnown RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 GOLGA5Q8TBA6 731 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 SCFD1Q8WVM8 642 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 TIFAQ96CG3 184 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 SAAL1Q96ER3 474 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 GAD1Q99259 594 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 TSG101Q99816 390 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 FAM213AQ9BRX8 229 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 TRAIPQ9BWF2 469 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 RNF39Q9H2S5 420 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 IKZF4Q9H2S9 585 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 RPF1Q9H9Y2 349 aaKnown RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 AAASQ9NRG9 546 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 KIAA1468Q9P260 1216 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 KANSL3Q9P2N6 904 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 MAN1B1Q9UKM7 699 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 MTUS1Q9ULD2 1270 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 GIT1Q9Y2X7 761 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 FNDC1Q4ZHG4 1894 aaPredicted RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 TDRD15B5MCY1 1934 aaKnown RBP6.89□□□□□ -1.31
LTBR-212ENST00000543542 PDE4DIPQ5VU43 2346 aa6.89□□□□□ -1.31
LTBR-212ENST00000543542 TTC3P53804 2025 aa6.88□□□□□ -1.31
LTBR-212ENST00000543542 NLRC5Q86WI3 1866 aa6.88□□□□□ -1.31
LTBR-212ENST00000543542 A0A0B4J269 797 aa6.88□□□□□ -1.31
LTBR-212ENST00000543542 LCHNA4D1U4 455 aa6.88□□□□□ -1.31
LTBR-212ENST00000543542 GOLGA8IPA6NC78 632 aa6.88□□□□□ -1.31
LTBR-212ENST00000543542 ARL5CA6NH57 179 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms