RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 LUC7L2Q9Y383 392 aaKnown RBP19.29■□□□□ 0.68
CLIP1-215ENST00000541108 TTC26A0AVF1 554 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 OGTO15294 1046 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 MFAP3LO75121 409 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 ERLIN2O94905 339 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 EIF4BP23588 611 aaKnown RBP19.28■□□□□ 0.68
CLIP1-215ENST00000541108 GTF2H1P32780 548 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 FXR1P51114 621 aaKnown RBP eCLIP19.28■□□□□ 0.68
CLIP1-215ENST00000541108 ADKP55263 362 aaKnown RBP19.28■□□□□ 0.68
CLIP1-215ENST00000541108 CLDN10P78369 228 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 NCBP1Q09161 790 aaKnown RBP19.28■□□□□ 0.68
CLIP1-215ENST00000541108 CETN1Q12798 172 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 ITGA7Q13683 1181 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 NOLC1Q14978 699 aaKnown RBP eCLIP19.28■□□□□ 0.68
CLIP1-215ENST00000541108 EXOC3L4Q17RC7 722 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 SLC9C1Q4G0N8 1177 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 CRELD2Q6UXH1 353 aaPredicted RBP19.28■□□□□ 0.68
CLIP1-215ENST00000541108 RSPH3Q86UC2 560 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 SERINC5Q86VE9 423 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 ZSCAN30Q86W11 494 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 CPLX3Q8WVH0 158 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 PPP1R16BQ96T49 567 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 TMX1Q9H3N1 280 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 PLCB1Q9NQ66 1216 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 PAK6Q9NQU5 681 aaPredicted RBP19.28■□□□□ 0.68
CLIP1-215ENST00000541108 GRIN2DO15399 1336 aa19.28■□□□□ 0.68
CLIP1-215ENST00000541108 A0A1B0GUA9 196 aa19.27■□□□□ 0.68
CLIP1-215ENST00000541108 B4GALT5O43286 388 aa19.27■□□□□ 0.68
CLIP1-215ENST00000541108 FAM189A1O60320 539 aa19.27■□□□□ 0.68
CLIP1-215ENST00000541108 DARSP14868 501 aaKnown RBP19.27■□□□□ 0.68
CLIP1-215ENST00000541108 CRYBB1P53674 252 aaPredicted RBP19.27■□□□□ 0.68
CLIP1-215ENST00000541108 DLG4P78352 724 aa19.27■□□□□ 0.68
CLIP1-215ENST00000541108 POU5F1Q01860 360 aaKnown RBP19.27■□□□□ 0.68
CLIP1-215ENST00000541108 PSMD6Q15008 389 aa19.27■□□□□ 0.68
CLIP1-215ENST00000541108 TMEM132AQ24JP5 1023 aa19.27■□□□□ 0.68
CLIP1-215ENST00000541108 FAM47CQ5HY64 1035 aa19.27■□□□□ 0.68
CLIP1-215ENST00000541108 ZNF397Q8NF99 534 aaPredicted RBP19.27■□□□□ 0.68
CLIP1-215ENST00000541108 NEK11Q8NG66 645 aa19.27■□□□□ 0.68
CLIP1-215ENST00000541108 SEZ6LQ9BYH1 1024 aa19.27■□□□□ 0.68
CLIP1-215ENST00000541108 TRIM49P0CI25 452 aa19.27■□□□□ 0.67
CLIP1-215ENST00000541108 TRIM49CP0CI26 452 aa19.27■□□□□ 0.67
CLIP1-215ENST00000541108 ARF4P18085 180 aaPredicted RBP19.27■□□□□ 0.67
CLIP1-215ENST00000541108 KRT9P35527 623 aa19.27■□□□□ 0.67
CLIP1-215ENST00000541108 ACOT2P49753 483 aa19.27■□□□□ 0.67
CLIP1-215ENST00000541108 KLK7P49862 253 aa19.27■□□□□ 0.67
CLIP1-215ENST00000541108 TMEM62Q0P6H9 643 aa19.27■□□□□ 0.67
CLIP1-215ENST00000541108 LRMPQ12912 555 aa19.27■□□□□ 0.67
CLIP1-215ENST00000541108 C1orf220Q5T0J3 134 aa19.27■□□□□ 0.67
CLIP1-215ENST00000541108 PLEKHO2Q8TD55 490 aa19.27■□□□□ 0.67
CLIP1-215ENST00000541108 VTI1AQ96AJ9 217 aa19.27■□□□□ 0.67
CLIP1-215ENST00000541108 FAM207AQ9NSI2 230 aaPredicted RBP19.27■□□□□ 0.67
CLIP1-215ENST00000541108 FBXL5Q9UKA1 691 aa19.27■□□□□ 0.67
CLIP1-215ENST00000541108 FRMPD3Q5JV73 1810 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 TSPAN1O60635 241 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 CSDE1O75534 798 aaKnown RBP19.26■□□□□ 0.67
CLIP1-215ENST00000541108 MCF2P10911 925 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 SKILP12757 684 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 PON1P27169 355 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 AXLP30530 894 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 ZBED6P86452 979 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 CCZ1BP86790 482 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 CCZ1P86791 482 aaPredicted RBP19.26■□□□□ 0.67
CLIP1-215ENST00000541108 KYAT1Q16773 422 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 ZNF568Q3ZCX4 644 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 CBWD6Q4V339 395 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 CBWD3Q5JTY5 395 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 CBWD5Q5RIA9 395 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 OR8K1Q8NGG5 319 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 CCDC127Q96BQ5 260 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 OSMRQ99650 979 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 CRACR2AQ9BSW2 395 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 NAA15Q9BXJ9 866 aaKnown RBP19.26■□□□□ 0.67
CLIP1-215ENST00000541108 CELF4Q9BZC1 486 aaKnown RBP19.26■□□□□ 0.67
CLIP1-215ENST00000541108 UNC93B1Q9H1C4 597 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 CDHR5Q9HBB8 845 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 RBAKQ9NYW8 714 aaPredicted RBP19.26■□□□□ 0.67
CLIP1-215ENST00000541108 CPSF3Q9UKF6 684 aaKnown RBP19.26■□□□□ 0.67
CLIP1-215ENST00000541108 GINS2Q9Y248 185 aa19.26■□□□□ 0.67
CLIP1-215ENST00000541108 M0QZ92 97 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 PPP3CAQ08209 521 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 SNX17Q15036 470 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 SURF1Q15526 300 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 PTGISQ16647 500 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 KRT39Q6A163 491 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 APBB1IPQ7Z5R6 666 aaPredicted RBP19.25■□□□□ 0.67
CLIP1-215ENST00000541108 ZBTB33Q86T24 672 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 FNBP1Q96RU3 617 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 DNAJC7Q99615 494 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 TMEM8AQ9HCN3 771 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 ABHD10Q9NUJ1 306 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 AGPAT5Q9NUQ2 364 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.25■□□□□ 0.67
CLIP1-215ENST00000541108 GCNT4Q9P109 453 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 CEP72Q9P209 647 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 PHF24Q9UPV7 400 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 DAAM1Q9Y4D1 1078 aa19.25■□□□□ 0.67
CLIP1-215ENST00000541108 LRRIQ3A6PVS8 624 aaPredicted RBP19.24■□□□□ 0.67
CLIP1-215ENST00000541108 KBTBD13C9JR72 458 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 RNF225M0QZC1 329 aaPredicted RBP19.24■□□□□ 0.67
CLIP1-215ENST00000541108 DNM1LO00429 736 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms