RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 THAP2Q9H0W7 228 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 HNRNPDLO14979 420 aaKnown RBP14.88□□□□□ -0.03
RTN3-210ENST00000540798 KIAA0391O15091 583 aaKnown RBP14.88□□□□□ -0.03
RTN3-210ENST00000540798 NAMPTP43490 491 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 MFAP3P55082 362 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 SLC7A5Q01650 507 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 PRPF4BQ13523 1007 aaKnown RBP14.88□□□□□ -0.03
RTN3-210ENST00000540798 USP37Q86T82 979 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 FBXL13Q8NEE6 735 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 ASAP3Q8TDY4 903 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 POP1Q99575 1024 aaKnown RBP14.88□□□□□ -0.03
RTN3-210ENST00000540798 ACBD3Q9H3P7 528 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 KIAA1586Q9HCI6 787 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 MED4Q9NPJ6 270 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 COG5Q9UP83 839 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 SPDYE5A6NIY4 337 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 DDX3YO15523 660 aaKnown RBP14.87□□□□□ -0.03
RTN3-210ENST00000540798 EXTL3O43909 919 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 SORBS3O60504 671 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 TGFB3P10600 412 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 GZMAP12544 262 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 GLRA2P23416 452 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 POLGP54098 1239 aaPredicted RBP14.87□□□□□ -0.03
RTN3-210ENST00000540798 SEPT14Q6ZU15 432 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 DAAM2Q86T65 1068 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 NOP9Q86U38 636 aaKnown RBP14.87□□□□□ -0.03
RTN3-210ENST00000540798 ERO1BQ86YB8 467 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 CAVIN3Q969G5 261 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 FGD4Q96M96 766 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 TOPORSQ9NS56 1045 aaPredicted RBP14.87□□□□□ -0.03
RTN3-210ENST00000540798 RAB20Q9NX57 234 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 POLR3GO15318 223 aaPredicted RBP14.87□□□□□ -0.03
RTN3-210ENST00000540798 ZC3H11AO75152 810 aaKnown RBP eCLIP14.87□□□□□ -0.032e-7■■■■■ 30.4
RTN3-210ENST00000540798 MTA2O94776 668 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 SGPL1O95470 568 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 RFC5P40937 340 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 EP400NLQ6ZTU2 488 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 SV2AQ7L0J3 742 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 RHOT2Q8IXI1 618 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 RPUSD2Q8IZ73 545 aaKnown RBP14.87□□□□□ -0.03
RTN3-210ENST00000540798 FAM71BQ8TC56 605 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 TAS1R2Q8TE23 839 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 CCDC127Q96BQ5 260 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 PCDHB18PQ96TA0 734 aa14.87□□□□□ -0.03
RTN3-210ENST00000540798 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.87□□□□□ -0.03
RTN3-210ENST00000540798 ASCC2Q9H1I8 757 aaPredicted RBP14.87□□□□□ -0.03
RTN3-210ENST00000540798 TMCO5BA8MYB1 307 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 RTN2O75298 545 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 CLSTN1O94985 981 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 GLI1P08151 1106 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 EPHB4P54760 987 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 NNTQ13423 1086 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 PSMD6Q15008 389 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 EMBQ6PCB8 327 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 GADL1Q6ZQY3 521 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 PSPC1Q8WXF1 523 aaKnown RBP14.86□□□□□ -0.03
RTN3-210ENST00000540798 ELP3Q9H9T3 547 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 AGTPBP1Q9UPW5 1226 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 DIS3Q9Y2L1 958 aaKnown RBP14.86□□□□□ -0.03
RTN3-210ENST00000540798 PPME1Q9Y570 386 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 SYF2O95926 243 aaKnown RBP14.86□□□□□ -0.03
RTN3-210ENST00000540798 DNA2P51530 1060 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 NEDD9Q14511 834 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 ZNF516Q92618 1163 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 HAPLN2Q9GZV7 340 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 AMFRQ9UKV5 643 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 ZNF233A6NK53 670 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 PGRMC1O00264 195 aaKnown RBP14.86□□□□□ -0.03
RTN3-210ENST00000540798 SLC25A27O95847 323 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 TNNC1P63316 161 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 FMO1Q01740 532 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 GCNT1Q02742 428 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 C11orf63Q6NUN7 778 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 IFT20Q8IY31 132 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 ANKRD13AQ8IZ07 590 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 PPM1KQ8N3J5 372 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 DDX1Q92499 740 aaKnown RBP14.86□□□□□ -0.03
RTN3-210ENST00000540798 TMEM143Q96AN5 459 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 CLMNQ96JQ2 1002 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 NT5C1BQ96P26 610 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 TMEM134Q9H6X4 195 aa14.86□□□□□ -0.03
RTN3-210ENST00000540798 ABCB4P21439 1286 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 MRPS25P82663 173 aaKnown RBP14.85□□□□□ -0.03
RTN3-210ENST00000540798 PPIL2Q13356 520 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 METTL7BQ6UX53 244 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 CRELD2Q6UXH1 353 aaPredicted RBP14.85□□□□□ -0.03
RTN3-210ENST00000540798 NCAPG2Q86XI2 1143 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 EIF1ADQ8N9N8 165 aaKnown RBP14.85□□□□□ -0.03
RTN3-210ENST00000540798 OTUD5Q96G74 571 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 KRT12Q99456 494 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 FAM213AQ9BRX8 229 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 R3HDMLQ9H3Y0 253 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 RNF181Q9P0P0 153 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 NOC2LQ9Y3T9 749 aaKnown RBP14.85□□□□□ -0.03
RTN3-210ENST00000540798 ADGRA2Q96PE1 1338 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 DNAJC25-GNG10A0A024R161 153 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 AGPSO00116 658 aa14.85□□□□□ -0.03
RTN3-210ENST00000540798 FTLP02792 175 aaPredicted RBP14.85□□□□□ -0.03
RTN3-210ENST00000540798 TNNT3P45378 269 aaPredicted RBP14.85□□□□□ -0.03
RTN3-210ENST00000540798 ENOSF1Q7L5Y1 443 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms