RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 NSMFQ6X4W1 530 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 SLC20A1Q8WUM9 679 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 LRMDAQ9H2I8 198 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 IKZF4Q9H2S9 585 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 METTL5Q9NRN9 209 aaKnown RBP13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 USP17L15C9J2P7 530 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 USP17L13C9JLJ4 530 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 USP17L11C9JVI0 530 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 USP17L18D6R9N7 530 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 USP17L22D6RA61 530 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 USP17L17D6RBQ6 530 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 USP17L19D6RCP7 530 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 USP17L20D6RJB6 530 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 E7ENQ6 273 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 CDH16O75309 829 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 TTC4O95801 387 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 KCNA3P22001 575 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 SP100P23497 879 aaPredicted RBP13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 FMO5P49326 533 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 RPS8P62241 208 aaKnown RBP13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 GPC5P78333 572 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 USP17L24Q0WX57 530 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 CUL3Q13618 768 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 PARP6Q2NL67 630 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 ARSHQ5FYA8 562 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 ZFYVE27Q5T4F4 411 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 RBM26Q5T8P6 1007 aaKnown RBP13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 RASIP1Q5U651 963 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 USP17L6PQ6QN14 398 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 CLEC10AQ8IUN9 316 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 KIAA0825Q8IV33 1275 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 DTX3LQ8TDB6 740 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 SPOCK2Q92563 424 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 PWWP2AQ96N64 755 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 AGPAT1Q99943 283 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 ADAM33Q9BZ11 813 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 INTS2Q9H0H0 1204 aaKnown RBP13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 SLCO1B3Q9NPD5 702 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 ZFP69BQ9UJL9 534 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 FAM47DPA6NHR8 397 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 hCG_1984214I3L0E3 225 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 RTN3O95197 1032 aaPredicted RBP13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 GGPS1O95749 300 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 LDHCP07864 332 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 BCRP11274 1271 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 TAC1P20366 129 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 ITGA8P53708 1063 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 GSTO1P78417 241 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 CDR2Q01850 454 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 ZBTB16Q05516 673 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 GIT2Q14161 759 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 SYCP3Q8IZU3 236 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 ZNF713Q8N859 430 aaPredicted RBP13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 NEDD1Q8NHV4 660 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 NAALADL1Q9UQQ1 740 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 CACNA1SQ13698 1873 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 CCNG1P51959 295 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 FAM98CQ17RN3 349 aaKnown RBP13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 ZNF365Q70YC5 407 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 CYP4X1Q8N118 509 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 VPS52Q8N1B4 723 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 GALNT15Q8N3T1 639 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 RBBP8NLQ8NC74 664 aaPredicted RBP13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 UCMAQ8WVF2 138 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 ATG4AQ8WYN0 398 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 UBE2TQ9NPD8 197 aaPredicted RBP13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 PRKAG3Q9UGI9 489 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 NPTXRO95502 500 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 GNAZP19086 355 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 CA4P22748 312 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 FOXN2P32314 431 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 RCN1Q15293 331 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 FYB2Q5VWT5 728 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 SCYL3Q8IZE3 742 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 B4GALNT2Q8NHY0 566 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 SLC30A5Q8TAD4 765 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 ASAP3Q8TDY4 903 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 DCLRE1BQ9H816 532 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 DCTN4Q9UJW0 460 aa13.72□□□□□ -0.21
SFSWAP-209ENST00000540469 EXOC1LA0A1B0GW35 172 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 FOXN3O00409 490 aaPredicted RBP13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 SLC16A3O15427 465 aaKnown RBP13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 MAP3K13O43283 966 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 EXOC3O60645 756 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 CTNNA2P26232 953 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 MARK3P27448 753 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 SERPINB4P48594 390 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 KCNQ4P56696 695 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 SPARCL1Q14515 664 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 LRRC23Q53EV4 343 aaPredicted RBP13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 CGB2Q6NT52 195 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 GSTA5Q7RTV2 222 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 TXNRD3Q86VQ6 643 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 ARAP2Q8WZ64 1704 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 SNF8Q96H20 258 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 APEX2Q9UBZ4 518 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 CHKBQ9Y259 395 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 NUP98P52948 1817 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 WDR91A4D1P6 747 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms