RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 GAP43P17677 238 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 SLC8A1P32418 973 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 FKBP1AP62942 108 aaKnown RBP21.8■■□□□ 1.08
TMEM260-203ENST00000539559 TLDC1Q6P9B6 456 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 KCNK9Q9NPC2 374 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 PCYOX1Q9UHG3 505 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 SLX4Q8IY92 1834 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 SNX3O60493 162 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 CFBP00751 764 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 CHKAP35790 457 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 COILP38432 576 aaPredicted RBP21.8■■□□□ 1.08
TMEM260-203ENST00000539559 CRKP46108 304 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 ICA1Q05084 483 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 PPP2R5EQ16537 467 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 LRCH2Q5VUJ6 765 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 OTOP1Q7RTM1 612 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 RHOT2Q8IXI1 618 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 AGAP11Q8TF27 550 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 CDC42EP4Q9H3Q1 356 aaKnown RBP21.8■■□□□ 1.08
TMEM260-203ENST00000539559 PKD2L1Q9P0L9 805 aa21.8■■□□□ 1.08
TMEM260-203ENST00000539559 TMEM120BA0PK00 339 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 SLC26A4O43511 780 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 SPOPO43791 374 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 NDUFB10O96000 172 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 GPC5P78333 572 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 NAA25Q14CX7 972 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 CC2D2BQ6DHV5 1058 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 PAXIP1Q6ZW49 1069 aaPredicted RBP21.79■■□□□ 1.08
TMEM260-203ENST00000539559 NSMCE1Q8WV22 266 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 C7orf43Q8WVR3 580 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 MRIQ9BWK5 157 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 ECT2Q9H8V3 914 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 DMAC2Q9NW81 257 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 STK38LQ9Y2H1 464 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 CEP83Q9Y592 693 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 IGLV3-22A0A075B6J6 115 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 DDX39AO00148 427 aaKnown RBP21.79■■□□□ 1.08
TMEM260-203ENST00000539559 SKAP2O75563 359 aaPredicted RBP21.79■■□□□ 1.08
TMEM260-203ENST00000539559 PAX7P23759 505 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 VPS41P49754 854 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 NCALDP61601 193 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 JAG1P78504 1218 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 NUGGCQ68CJ6 796 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 PHLDB2Q86SQ0 1253 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 MAGEC3Q8TD91 643 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 ATG4AQ8WYN0 398 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 ARHGEF2Q92974 986 aaKnown RBP21.79■■□□□ 1.08
TMEM260-203ENST00000539559 TBK1Q9UHD2 729 aa21.79■■□□□ 1.08
TMEM260-203ENST00000539559 IGF2BP3O00425 579 aaKnown RBP eCLIP21.78■■□□□ 1.08
TMEM260-203ENST00000539559 CLDN3O15551 220 aa21.78■■□□□ 1.08
TMEM260-203ENST00000539559 ALDH5A1P51649 535 aaPredicted RBP21.78■■□□□ 1.08
TMEM260-203ENST00000539559 NOP9Q86U38 636 aaKnown RBP21.78■■□□□ 1.08
TMEM260-203ENST00000539559 KIAA0825Q8IV33 1275 aa21.78■■□□□ 1.08
TMEM260-203ENST00000539559 DCAF4Q8WV16 495 aa21.78■■□□□ 1.08
TMEM260-203ENST00000539559 ZDHHC15Q96MV8 337 aa21.78■■□□□ 1.08
TMEM260-203ENST00000539559 ATP6V0A4Q9HBG4 840 aa21.78■■□□□ 1.08
TMEM260-203ENST00000539559 AAASQ9NRG9 546 aa21.78■■□□□ 1.08
TMEM260-203ENST00000539559 CNOT7Q9UIV1 285 aaKnown RBP21.78■■□□□ 1.08
TMEM260-203ENST00000539559 RARGP13631 454 aa21.78■■□□□ 1.08
TMEM260-203ENST00000539559 MPP2Q14168 576 aa21.78■■□□□ 1.08
TMEM260-203ENST00000539559 DACT2Q5SW24 774 aa21.78■■□□□ 1.08
TMEM260-203ENST00000539559 SLC13A5Q86YT5 568 aaPredicted RBP21.78■■□□□ 1.08
TMEM260-203ENST00000539559 ART4Q93070 314 aa21.78■■□□□ 1.08
TMEM260-203ENST00000539559 MKNK1Q9BUB5 465 aa21.78■■□□□ 1.08
TMEM260-203ENST00000539559 PODXLO00592 558 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 SIX1Q15475 284 aaPredicted RBP21.77■■□□□ 1.08
TMEM260-203ENST00000539559 SYDE2Q5VT97 1194 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 RPAINQ86UA6 219 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 SLC47A2Q86VL8 602 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 FAM118BQ9BPY3 351 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 CBWD1Q9BRT8 395 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 TP73O15350 636 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 CYP26A1O43174 497 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 ANP32DO95626 131 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 ALAS1P13196 640 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 CHRNB2P17787 502 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 C11orf63Q6NUN7 778 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 VSTM1Q6UX27 236 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 RNF207Q6ZRF8 634 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 NUP85Q9BW27 656 aa21.77■■□□□ 1.08
TMEM260-203ENST00000539559 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.77■■□□□ 1.08
TMEM260-203ENST00000539559 MYH11P35749 1972 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 MIF4GDA9UHW6 222 aaKnown RBP21.76■■□□□ 1.07
TMEM260-203ENST00000539559 NQO1P15559 274 aaKnown RBP21.76■■□□□ 1.07
TMEM260-203ENST00000539559 CIITAP33076 1130 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 AOC3Q16853 763 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 SUPT20HQ8NEM7 779 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 USP15Q9Y4E8 981 aaPredicted RBP21.76■■□□□ 1.07
TMEM260-203ENST00000539559 GOLGA8IPA6NC78 632 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 GOLGA8JA6NMD2 632 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 HIP1RO75146 1068 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 GSTA1P08263 222 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 BCRP11274 1271 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 BAG6P46379 1132 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 RBM5P52756 815 aaKnown RBP eCLIP21.76■■□□□ 1.07
TMEM260-203ENST00000539559 TNFAIP8L3Q5GJ75 292 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 DAB2IPQ5VWQ8 1189 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 SH3BP5LQ7L8J4 393 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 PLEKHO2Q8TD55 490 aa21.76■■□□□ 1.07
TMEM260-203ENST00000539559 K7ENM7 598 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms