RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 VPS52Q8N1B4 723 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 MRPL43Q8N983 215 aaKnown RBP16.3■□□□□ 0.2
USP28-204ENST00000537642 CALML4Q96GE6 196 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 ZBP1Q9H171 429 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 C17orf75Q9HAS0 396 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 BLOC1S4Q9NUP1 217 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 KLK14Q9P0G3 267 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 ARHGAP28Q9P2N2 729 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 PARP2Q9UGN5 583 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 BARX2Q9UMQ3 279 aaPredicted RBP16.3■□□□□ 0.2
USP28-204ENST00000537642 FAN1Q9Y2M0 1017 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 MYH15Q9Y2K3 1946 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 ZMYM2Q9UBW7 1377 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 PHLPP2Q6ZVD8 1323 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 NPHP3-ACAD11A0A0J9YXS1 232 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 C2orf71A6NGG8 1288 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 K7ERI5 159 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 MBTPS2O43462 519 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 MARCKSP29966 332 aaPredicted RBP16.29■□□□□ 0.2
USP28-204ENST00000537642 KARSQ15046 597 aaKnown RBP16.29■□□□□ 0.2
USP28-204ENST00000537642 ARSHQ5FYA8 562 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 ATF7IP2Q5U623 682 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 FAM178BQ8IXR5 827 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 AUTS2Q8WXX7 1259 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 ADPGKQ9BRR6 497 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 ZSCAN16Q9H4T2 348 aaPredicted RBP16.29■□□□□ 0.2
USP28-204ENST00000537642 TMEM134Q9H6X4 195 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 KMT5AQ9NQR1 393 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 MARCH5Q9NX47 278 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 SNTG2Q9NY99 539 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 KCND2Q9NZV8 630 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 CD207Q9UJ71 328 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 FBXO2Q9UK22 296 aaPredicted RBP16.29■□□□□ 0.2
USP28-204ENST00000537642 TRIP11Q15643 1979 aa16.29■□□□□ 0.2
USP28-204ENST00000537642 BDP1A6H8Y1 2624 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 FSD2A1L4K1 749 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 SLC16A4O15374 487 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 CXCL14O95715 111 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 CTSAP10619 480 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 PLCG1P19174 1290 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 CACNB1Q02641 598 aaPredicted RBP16.28■□□□□ 0.2
USP28-204ENST00000537642 CEBPZQ03701 1054 aaKnown RBP16.28■□□□□ 0.2
USP28-204ENST00000537642 COASYQ13057 564 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 SMAD4Q13485 552 aaKnown RBP16.28■□□□□ 0.2
USP28-204ENST00000537642 SPECC1Q5M775 1068 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 USP49Q70CQ1 688 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 SPIRE2Q8WWL2 714 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 USP28Q96RU2 1077 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 NTPCRQ9BSD7 190 aaKnown RBP16.28■□□□□ 0.2
USP28-204ENST00000537642 CCSER1Q9C0I3 900 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 CD320Q9NPF0 282 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 PRG3Q9Y2Y8 225 aaPredicted RBP16.28■□□□□ 0.2
USP28-204ENST00000537642 RBM19Q9Y4C8 960 aaKnown RBP16.28■□□□□ 0.2
USP28-204ENST00000537642 SRPRBQ9Y5M8 271 aaKnown RBP16.28■□□□□ 0.2
USP28-204ENST00000537642 C5orf42Q9H799 3197 aa16.28■□□□□ 0.2
USP28-204ENST00000537642 RECQL4O94761 1208 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 PLS3P13797 630 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 OR1G1P47890 313 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 GRIK3Q13003 919 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 MCM6Q14566 821 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 BMS1Q14692 1282 aaKnown RBP16.27■□□□□ 0.2
USP28-204ENST00000537642 SMAD2Q15796 467 aaKnown RBP16.27■□□□□ 0.2
USP28-204ENST00000537642 DCAF4L1Q3SXM0 396 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 TMEM184AQ6ZMB5 413 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 GPBP1Q86WP2 473 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 SMRP1Q8NCR6 262 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 RAD54LQ92698 747 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 EPSTI1Q96J88 318 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 CLIC6Q96NY7 704 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 RPS6KC1Q96S38 1066 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 ACO2Q99798 780 aaKnown RBP16.27■□□□□ 0.2
USP28-204ENST00000537642 CXCL16Q9H2A7 254 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 FAM50BQ9Y247 325 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 TNFSF13BQ9Y275 285 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 IRAK3Q9Y616 596 aa16.27■□□□□ 0.2
USP28-204ENST00000537642 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.26■□□□□ 0.19
USP28-204ENST00000537642 F8W810 466 aa16.26■□□□□ 0.19
USP28-204ENST00000537642 PTGESO14684 152 aa16.26■□□□□ 0.19
USP28-204ENST00000537642 CLASP2O75122 1294 aaKnown RBP16.26■□□□□ 0.19
USP28-204ENST00000537642 CA8P35219 290 aa16.26■□□□□ 0.19
USP28-204ENST00000537642 DHX8Q14562 1220 aaKnown RBP16.26■□□□□ 0.19
USP28-204ENST00000537642 LLGL2Q6P1M3 1020 aa16.26■□□□□ 0.19
USP28-204ENST00000537642 TMEM161BQ8NDZ6 487 aa16.26■□□□□ 0.19
USP28-204ENST00000537642 RASSF8Q8NHQ8 419 aa16.26■□□□□ 0.19
USP28-204ENST00000537642 REEP2Q9BRK0 252 aa16.26■□□□□ 0.19
USP28-204ENST00000537642 TARS2Q9BW92 718 aaKnown RBP16.26■□□□□ 0.19
USP28-204ENST00000537642 MRPL4Q9BYD3 311 aaKnown RBP16.26■□□□□ 0.19
USP28-204ENST00000537642 PTPRHQ9HD43 1115 aa16.26■□□□□ 0.19
USP28-204ENST00000537642 GDAQ9Y2T3 454 aa16.26■□□□□ 0.19
USP28-204ENST00000537642 MORC2Q9Y6X9 1032 aaPredicted RBP16.26■□□□□ 0.19
USP28-204ENST00000537642 ABLIM1O14639 778 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 EFEMP2O95967 443 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 ZP2Q05996 745 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 SLC39A14Q15043 492 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 PTPN14Q15678 1187 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 ANKRD54Q6NXT1 300 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 TAS1R1Q7RTX1 841 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 RNF168Q8IYW5 571 aaPredicted RBP16.25■□□□□ 0.19
USP28-204ENST00000537642 COLEC11Q9BWP8 271 aa16.25■□□□□ 0.19
USP28-204ENST00000537642 CDT1Q9H211 546 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms