RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 RXFP1Q9HBX9 757 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 KLK14Q9P0G3 267 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 STK39Q9UEW8 545 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 GIT1Q9Y2X7 761 aa9.39□□□□□ -0.91
USP28-203ENST00000537490 A0A1B0GUA9 196 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 SPDYE4A6NLX3 237 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 TTLL13PA6NNM8 815 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 DSG1Q02413 1049 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 ZNF174Q15697 407 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 CCDC149Q6ZUS6 474 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 B3GALT6Q96L58 329 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 CCDC43Q96MW1 224 aaKnown RBP9.38□□□□□ -0.91
USP28-203ENST00000537490 COLEC11Q9BWP8 271 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 GPR62Q9BZJ7 368 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 TRIM6Q9C030 488 aaPredicted RBP9.38□□□□□ -0.91
USP28-203ENST00000537490 MAN1C1Q9NR34 630 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 CHST7Q9NS84 486 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 FAM86C1Q9NVL1 165 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 CACNG4Q9UBN1 327 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 PARP2Q9UGN5 583 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 SSX2IPQ9Y2D8 614 aa9.38□□□□□ -0.91
USP28-203ENST00000537490 MYO10Q9HD67 2058 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 CCDC195A0A1B0GUA6 201 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 LRRIQ4A6NIV6 560 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 RFPL2O75678 378 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 GLUD1P00367 558 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 ADH1AP07327 375 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 SPATA31D3P0C874 917 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 GLUD2P49448 558 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 FUT10Q6P4F1 479 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 SLC27A1Q6PCB7 646 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 C15orf39Q6ZRI6 1047 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 SPATA31D4Q6ZUB0 917 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 OTOP3Q7RTS5 596 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 PALB2Q86YC2 1186 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 CCDC83Q8IWF9 413 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 HACE1Q8IYU2 909 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 TMEM105Q8N8V8 129 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 CMASQ8NFW8 434 aaPredicted RBP9.37□□□□□ -0.91
USP28-203ENST00000537490 BSNDQ8WZ55 320 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 ACSF2Q96CM8 615 aaPredicted RBP9.37□□□□□ -0.91
USP28-203ENST00000537490 NACC1Q96RE7 527 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 PAAF1Q9BRP4 392 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 POLR3CQ9BUI4 534 aaPredicted RBP9.37□□□□□ -0.91
USP28-203ENST00000537490 CXCL16Q9H2A7 254 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 FZD8Q9H461 694 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 POLD4Q9HCU8 107 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 TUFT1Q9NNX1 390 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 USP20Q9Y2K6 914 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 C5orf42Q9H799 3197 aa9.37□□□□□ -0.91
USP28-203ENST00000537490 H0Y858 1186 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 N4BP1O75113 896 aaKnown RBP9.36□□□□□ -0.91
USP28-203ENST00000537490 NR1I2O75469 434 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 EDN1P05305 212 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 RPL17P18621 184 aaKnown RBP9.36□□□□□ -0.91
USP28-203ENST00000537490 CYP11B2P19099 503 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 RPA1P27694 616 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 GRIK3Q13003 919 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 SAFBQ15424 915 aaKnown RBP eCLIP9.36□□□□□ -0.91
USP28-203ENST00000537490 ECM1Q16610 540 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 FAM187BQ17R55 369 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 CDCA2Q69YH5 1023 aaPredicted RBP9.36□□□□□ -0.91
USP28-203ENST00000537490 LILRA6Q6PI73 481 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 POTEGQ6S5H5 508 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 PADI6Q6TGC4 694 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 GLYCTKQ8IVS8 523 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 MCPH1Q8NEM0 835 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 RIN2Q8WYP3 895 aaPredicted RBP9.36□□□□□ -0.91
USP28-203ENST00000537490 ATOH1Q92858 354 aaPredicted RBP9.36□□□□□ -0.91
USP28-203ENST00000537490 ZNF707Q96C28 371 aaPredicted RBP9.36□□□□□ -0.91
USP28-203ENST00000537490 C8orf76Q96K31 380 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 KCNK12Q9HB15 430 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 WDR6Q9NNW5 1121 aaKnown RBP9.36□□□□□ -0.91
USP28-203ENST00000537490 PRMT7Q9NVM4 692 aaPredicted RBP9.36□□□□□ -0.91
USP28-203ENST00000537490 SNTG2Q9NY99 539 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 LIMCH1Q9UPQ0 1083 aa9.36□□□□□ -0.91
USP28-203ENST00000537490 CASTOR2A6NHX0 329 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 PTGESO14684 152 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 TGM5O43548 720 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 GALR2O43603 387 aaPredicted RBP9.35□□□□□ -0.91
USP28-203ENST00000537490 TADA2AO75478 443 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 OR52Z1P0C646 297 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 NPR3P17342 541 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 LIG1P18858 919 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 NUBP1P53384 320 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 TUSC3Q13454 348 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 TDGQ13569 410 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 USP41Q3LFD5 358 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 RTP2Q5QGT7 225 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 TTC38Q5R3I4 469 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 ERICH6BQ5W0A0 696 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 EEF1DP3Q658K8 133 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 ASTLQ6HA08 431 aaPredicted RBP9.35□□□□□ -0.91
USP28-203ENST00000537490 PRSS55Q6UWB4 352 aaPredicted RBP9.35□□□□□ -0.91
USP28-203ENST00000537490 NOSTRINQ8IVI9 506 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 ZBTB8OSQ8IWT0 167 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 GPR65Q8IYL9 337 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 C4orf32Q8N8J7 132 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 RSAD2Q8WXG1 361 aa9.35□□□□□ -0.91
USP28-203ENST00000537490 SMG7Q92540 1137 aaKnown RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms