RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 MRE11P49959 708 aa16.31■□□□□ 0.2
VPS28-215ENST00000531924 CLCN4P51793 760 aa16.31■□□□□ 0.2
VPS28-215ENST00000531924 AMHR2Q16671 573 aa16.31■□□□□ 0.2
VPS28-215ENST00000531924 HAUS3Q68CZ6 603 aa16.31■□□□□ 0.2
VPS28-215ENST00000531924 PADI6Q6TGC4 694 aa16.31■□□□□ 0.2
VPS28-215ENST00000531924 GPR149Q86SP6 731 aa16.31■□□□□ 0.2
VPS28-215ENST00000531924 CDR2LQ86X02 465 aaPredicted RBP16.31■□□□□ 0.2
VPS28-215ENST00000531924 ZDHHC14Q8IZN3 488 aa16.31■□□□□ 0.2
VPS28-215ENST00000531924 DEPTORQ8TB45 409 aa16.31■□□□□ 0.2
VPS28-215ENST00000531924 ZSCAN31Q96LW9 406 aaPredicted RBP16.31■□□□□ 0.2
VPS28-215ENST00000531924 KLK14Q9P0G3 267 aa16.31■□□□□ 0.2
VPS28-215ENST00000531924 A0A1B0GUA9 196 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 INPPL1O15357 1258 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 MED24O75448 989 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 TADA2AO75478 443 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 GLUD1P00367 558 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 DSC1Q08554 894 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 GRIK3Q13003 919 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 PRPF4BQ13523 1007 aaKnown RBP16.3■□□□□ 0.2
VPS28-215ENST00000531924 MAPK6Q16659 721 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 TTC38Q5R3I4 469 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 IER5LQ5T953 404 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 POTEGQ6S5H5 508 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 TAS1R1Q7RTX1 841 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 ASIC4Q96FT7 647 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 PRIMPOLQ96LW4 560 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 MFSD1Q9H3U5 465 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 MAN1C1Q9NR34 630 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 MARCH5Q9NX47 278 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 MIOSQ9NXC5 875 aa16.3■□□□□ 0.2
VPS28-215ENST00000531924 TECTAO75443 2155 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 N4BP3O15049 544 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 TEX28O15482 410 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 LILRB3O75022 631 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 ASGR2P07307 311 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 RPA1P27694 616 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 CCT6AP40227 531 aaKnown RBP16.29■□□□□ 0.2
VPS28-215ENST00000531924 ST3GAL1Q11201 340 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 PPP2R5AQ15172 486 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 USP41Q3LFD5 358 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 C15orf39Q6ZRI6 1047 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 NOSTRINQ8IVI9 506 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 FBXO18Q8NFZ0 1043 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 IFT74Q96LB3 600 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 ADPGKQ9BRR6 497 aa16.29■□□□□ 0.2
VPS28-215ENST00000531924 SH2B1Q9NRF2 756 aaPredicted RBP16.29■□□□□ 0.2
VPS28-215ENST00000531924 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.29■□□□□ 0.2
VPS28-215ENST00000531924 CCDC195A0A1B0GUA6 201 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 BRD1O95696 1058 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 MYBP10242 640 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 CYP11B2P19099 503 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 AVPR2P30518 371 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 TRAPPC10P48553 1259 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 DSG1Q02413 1049 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 CREMQ03060 361 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 KIAA0319Q5VV43 1072 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 PPP4R3CPQ6ZMV5 832 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 APBB1IPQ7Z5R6 666 aaPredicted RBP16.28■□□□□ 0.2
VPS28-215ENST00000531924 PRSS33Q8NF86 280 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 RIN2Q8WYP3 895 aaPredicted RBP16.28■□□□□ 0.2
VPS28-215ENST00000531924 STAMQ92783 540 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 RAB34Q9BZG1 259 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 IRF2BPLQ9H1B7 796 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 PIDD1Q9HB75 910 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 LRWD1Q9UFC0 647 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 ADAM28Q9UKQ2 775 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 STK24Q9Y6E0 443 aa16.28■□□□□ 0.2
VPS28-215ENST00000531924 PIEZO1Q92508 2521 aa16.27■□□□□ 0.2
VPS28-215ENST00000531924 ZMYM2Q9UBW7 1377 aa16.27■□□□□ 0.2
VPS28-215ENST00000531924 PRKCBP05771 671 aa16.27■□□□□ 0.2
VPS28-215ENST00000531924 MUTP22033 750 aa16.27■□□□□ 0.2
VPS28-215ENST00000531924 NAMPTP43490 491 aa16.27■□□□□ 0.2
VPS28-215ENST00000531924 VCPP55072 806 aaKnown RBP16.27■□□□□ 0.2
VPS28-215ENST00000531924 CDCA2Q69YH5 1023 aaPredicted RBP16.27■□□□□ 0.2
VPS28-215ENST00000531924 FUT10Q6P4F1 479 aa16.27■□□□□ 0.2
VPS28-215ENST00000531924 CYP26C1Q6V0L0 522 aa16.27■□□□□ 0.2
VPS28-215ENST00000531924 PALB2Q86YC2 1186 aa16.27■□□□□ 0.2
VPS28-215ENST00000531924 CMASQ8NFW8 434 aaPredicted RBP16.27■□□□□ 0.2
VPS28-215ENST00000531924 RABGGTAQ92696 567 aa16.27■□□□□ 0.2
VPS28-215ENST00000531924 FZD8Q9H461 694 aa16.27■□□□□ 0.2
VPS28-215ENST00000531924 RXFP1Q9HBX9 757 aa16.27■□□□□ 0.2
VPS28-215ENST00000531924 ARID2Q68CP9 1835 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 SF3B1O75533 1304 aaKnown RBP eCLIP16.26■□□□□ 0.195e-6■■■■■ 49.5
VPS28-215ENST00000531924 F8W810 466 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 ACKR2O00590 384 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 PDGFBP01127 241 aaPredicted RBP16.26■□□□□ 0.19
VPS28-215ENST00000531924 SPATA31D3P0C874 917 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 GBP2P32456 591 aaPredicted RBP16.26■□□□□ 0.19
VPS28-215ENST00000531924 EFNA5P52803 228 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 TUSC3Q13454 348 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 HSP90AA2PQ14568 343 aaPredicted RBP16.26■□□□□ 0.19
VPS28-215ENST00000531924 FAM187BQ17R55 369 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 SPATA31D4Q6ZUB0 917 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 GLYCTKQ8IVS8 523 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 SMG7Q92540 1137 aaKnown RBP16.26■□□□□ 0.19
VPS28-215ENST00000531924 KIFAP3Q92845 792 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 B3GALT6Q96L58 329 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 GPR62Q9BZJ7 368 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 PLEKHA4Q9H4M7 779 aa16.26■□□□□ 0.19
VPS28-215ENST00000531924 PDZD7Q9H5P4 517 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms