RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 CDR2LQ86X02 465 aaPredicted RBP22.7■■□□□ 1.22
VPS28-206ENST00000526734 COLGALT2Q8IYK4 626 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 SMRP1Q8NCR6 262 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 POP1Q99575 1024 aaKnown RBP22.7■■□□□ 1.22
VPS28-206ENST00000526734 NTPCRQ9BSD7 190 aaKnown RBP22.7■■□□□ 1.22
VPS28-206ENST00000526734 KIFC3Q9BVG8 833 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 CLEC1BQ9P126 229 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 PARP2Q9UGN5 583 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 MTMR6Q9Y217 621 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 TNFSF13BQ9Y275 285 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 NCOR1O75376 2440 aa22.7■■□□□ 1.22
VPS28-206ENST00000526734 HIDE1A8MVS5 230 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 H0YCG3 227 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 NRP1O14786 923 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 PER2O15055 1255 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 B4GALT3O60512 393 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 LIG1P18858 919 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 SMTNP53814 917 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 ATF7IP2Q5U623 682 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 RASSF8Q8NHQ8 419 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 CASP10Q92851 521 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 ZFP42Q96MM3 310 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 MRPL4Q9BYD3 311 aaKnown RBP22.69■■□□□ 1.22
VPS28-206ENST00000526734 CCSER1Q9C0I3 900 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 LARSQ9P2J5 1176 aaKnown RBP22.69■■□□□ 1.22
VPS28-206ENST00000526734 ODF2LQ9ULJ1 636 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 SSX2IPQ9Y2D8 614 aa22.69■■□□□ 1.22
VPS28-206ENST00000526734 CXCL14O95715 111 aa22.68■■□□□ 1.22
VPS28-206ENST00000526734 PLS3P13797 630 aa22.68■■□□□ 1.22
VPS28-206ENST00000526734 HOXB8P17481 243 aaPredicted RBP22.68■■□□□ 1.22
VPS28-206ENST00000526734 AKAP5P24588 427 aa22.68■■□□□ 1.22
VPS28-206ENST00000526734 KCNC3Q14003 757 aa22.68■■□□□ 1.22
VPS28-206ENST00000526734 PTPAQ15257 358 aa22.68■■□□□ 1.22
VPS28-206ENST00000526734 TMEM87AQ8NBN3 555 aa22.68■■□□□ 1.22
VPS28-206ENST00000526734 BCL7CQ8WUZ0 217 aaPredicted RBP22.68■■□□□ 1.22
VPS28-206ENST00000526734 COLEC11Q9BWP8 271 aa22.68■■□□□ 1.22
VPS28-206ENST00000526734 BARX2Q9UMQ3 279 aaPredicted RBP22.68■■□□□ 1.22
VPS28-206ENST00000526734 VCANP13611 3396 aa22.68■■□□□ 1.22
VPS28-206ENST00000526734 TCF20Q9UGU0 1960 aaKnown RBP22.67■■□□□ 1.22
VPS28-206ENST00000526734 XIRP2A4UGR9 3374 aa22.67■■□□□ 1.22
VPS28-206ENST00000526734 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.67■■□□□ 1.22
VPS28-206ENST00000526734 TTLL13PA6NNM8 815 aa22.67■■□□□ 1.22
VPS28-206ENST00000526734 OR1G1P47890 313 aa22.67■■□□□ 1.22
VPS28-206ENST00000526734 PPFIBP1Q86W92 1011 aa22.67■■□□□ 1.22
VPS28-206ENST00000526734 ADHFE1Q8IWW8 467 aa22.67■■□□□ 1.22
VPS28-206ENST00000526734 GJD3Q8N144 294 aa22.67■■□□□ 1.22
VPS28-206ENST00000526734 GSTCDQ8NEC7 633 aa22.67■■□□□ 1.22
VPS28-206ENST00000526734 KCNN1Q92952 543 aa22.67■■□□□ 1.22
VPS28-206ENST00000526734 PLIN2Q99541 437 aa22.67■■□□□ 1.22
VPS28-206ENST00000526734 POLD4Q9HCU8 107 aa22.67■■□□□ 1.22
VPS28-206ENST00000526734 SRPRBQ9Y5M8 271 aaKnown RBP22.67■■□□□ 1.22
VPS28-206ENST00000526734 CLIC4Q9Y696 253 aa22.67■■□□□ 1.22
VPS28-206ENST00000526734 SOD2P04179 222 aa22.66■■□□□ 1.22
VPS28-206ENST00000526734 HSP90AA1P07900 732 aaKnown RBP22.66■■□□□ 1.22
VPS28-206ENST00000526734 CA8P35219 290 aa22.66■■□□□ 1.22
VPS28-206ENST00000526734 TXLNAP40222 546 aa22.66■■□□□ 1.22
VPS28-206ENST00000526734 STRN3Q13033 797 aa22.66■■□□□ 1.22
VPS28-206ENST00000526734 CLUL1Q15846 466 aa22.66■■□□□ 1.22
VPS28-206ENST00000526734 NT5DC1Q5TFE4 455 aa22.66■■□□□ 1.22
VPS28-206ENST00000526734 EEF1DP3Q658K8 133 aa22.66■■□□□ 1.22
VPS28-206ENST00000526734 VN1R2Q8NFZ6 395 aa22.66■■□□□ 1.22
VPS28-206ENST00000526734 HERC2P3Q9BVR0 1158 aa22.66■■□□□ 1.22
VPS28-206ENST00000526734 EMILIN2Q9BXX0 1053 aa22.66■■□□□ 1.22
VPS28-206ENST00000526734 MIOSQ9NXC5 875 aa22.66■■□□□ 1.22
VPS28-206ENST00000526734 PRG3Q9Y2Y8 225 aaPredicted RBP22.66■■□□□ 1.22
VPS28-206ENST00000526734 RECQL4O94761 1208 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 EDN1P05305 212 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 URODP06132 367 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 PLCG1P19174 1290 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 ABCD1P33897 745 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 ZP2Q05996 745 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 TUSC3Q13454 348 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 PTPN14Q15678 1187 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 TPRNQ4KMQ1 711 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 ANKRD54Q6NXT1 300 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 GPBP1Q86WP2 473 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 GPR65Q8IYL9 337 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 RAD54LQ92698 747 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 ACO2Q99798 780 aaKnown RBP22.65■■□□□ 1.22
VPS28-206ENST00000526734 MRPL17Q9NRX2 175 aaKnown RBP22.65■■□□□ 1.22
VPS28-206ENST00000526734 TOPORSQ9NS56 1045 aaPredicted RBP22.65■■□□□ 1.22
VPS28-206ENST00000526734 FOXD4L1Q9NU39 408 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 DZANK1Q9NVP4 752 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 MARCH5Q9NX47 278 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 SNTG2Q9NY99 539 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 STK17AQ9UEE5 414 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 CCDC39Q9UFE4 941 aa22.65■■□□□ 1.22
VPS28-206ENST00000526734 FBXO2Q9UK22 296 aaPredicted RBP22.65■■□□□ 1.22
VPS28-206ENST00000526734 SPTBN5Q9NRC6 3674 aaKnown RBP22.64■■□□□ 1.22
VPS28-206ENST00000526734 SLC16A4O15374 487 aa22.64■■□□□ 1.21
VPS28-206ENST00000526734 CLASP2O75122 1294 aaKnown RBP22.64■■□□□ 1.21
VPS28-206ENST00000526734 THP07101 528 aa22.64■■□□□ 1.21
VPS28-206ENST00000526734 SSTR3P32745 418 aaPredicted RBP22.64■■□□□ 1.21
VPS28-206ENST00000526734 GRIN1Q05586 938 aa22.64■■□□□ 1.21
VPS28-206ENST00000526734 KARSQ15046 597 aaKnown RBP22.64■■□□□ 1.21
VPS28-206ENST00000526734 ZNF568Q3ZCX4 644 aa22.64■■□□□ 1.21
VPS28-206ENST00000526734 RNF168Q8IYW5 571 aaPredicted RBP22.64■■□□□ 1.21
VPS28-206ENST00000526734 LARP4BQ92615 738 aaKnown RBP22.64■■□□□ 1.21
VPS28-206ENST00000526734 CCDC94Q9BW85 323 aaPredicted RBP22.64■■□□□ 1.21
VPS28-206ENST00000526734 VN1R3Q9BXE9 311 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms