RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 VPS52Q8N1B4 723 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 PRSS33Q8NF86 280 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 TMEM143Q96AN5 459 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 NECTIN4Q96NY8 510 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 PLIN2Q99541 437 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 PRRX2Q99811 253 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 SCAND2PQ9GZW5 306 aaPredicted RBP11.2□□□□□ -0.62
VPS28-204ENST00000526054 GBP3Q9H0R5 595 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 POMKQ9H5K3 350 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 XPNPEP1Q9NQW7 623 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 AGPAT5Q9NUQ2 364 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 TBC1D13Q9NVG8 400 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 RCOR1Q9UKL0 485 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 COL4A3BPQ9Y5P4 624 aa11.2□□□□□ -0.62
VPS28-204ENST00000526054 MEIS3P2A8K0S8 358 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 ASAP2O43150 1006 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 CXCL14O95715 111 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 SSBP05455 408 aaKnown RBP eCLIP11.19□□□□□ -0.62
VPS28-204ENST00000526054 CYP11B2P19099 503 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 PLCG1P19174 1290 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 PTPN5P54829 565 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 MTMR3Q13615 1198 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 GIT2Q14161 759 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 TFDP1Q14186 410 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 MXD4Q14582 209 aaPredicted RBP11.19□□□□□ -0.62
VPS28-204ENST00000526054 SPECC1Q5M775 1068 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 CCDC73Q6ZRK6 1079 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 KCNK18Q7Z418 384 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 URGCPQ8TCY9 931 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 LEO1Q8WVC0 666 aaPredicted RBP11.19□□□□□ -0.62
VPS28-204ENST00000526054 AUTS2Q8WXX7 1259 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 PGBD4Q96DM1 585 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 ASIC4Q96FT7 647 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 IGSF21Q96ID5 467 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 EPSTI1Q96J88 318 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 RIPOR3Q96MK2 946 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 POLR3FQ9H1D9 316 aaPredicted RBP11.19□□□□□ -0.62
VPS28-204ENST00000526054 ADAM7Q9H2U9 754 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 NRDE2Q9H7Z3 1164 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 IFT122Q9HBG6 1241 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 DZANK1Q9NVP4 752 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 CHMP5Q9NZZ3 219 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 STK17AQ9UEE5 414 aa11.19□□□□□ -0.62
VPS28-204ENST00000526054 ZDBF2Q9HCK1 2354 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 C2CD4DB7Z1M9 353 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 ZNF623O75123 536 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 GALTP07902 379 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 PLA2G4BP0C869 781 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 CTSAP10619 480 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 STAT6P42226 847 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 MTHFRP42898 656 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 SLC11A1P49279 550 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 LAMTOR4Q0VGL1 99 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 RARS2Q5T160 578 aaKnown RBP11.18□□□□□ -0.62
VPS28-204ENST00000526054 IER5LQ5T953 404 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 RRAGBQ5VZM2 374 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 KIAA1841Q6NSI8 718 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 USP49Q70CQ1 688 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 MAEAQ7L5Y9 396 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 SRGAP1Q7Z6B7 1085 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 DDX53Q86TM3 631 aaKnown RBP11.18□□□□□ -0.62
VPS28-204ENST00000526054 SYT2Q8N9I0 419 aaPredicted RBP11.18□□□□□ -0.62
VPS28-204ENST00000526054 TDRD5Q8NAT2 981 aaKnown RBP11.18□□□□□ -0.62
VPS28-204ENST00000526054 KREMEN2Q8NCW0 462 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 BCL7CQ8WUZ0 217 aaPredicted RBP11.18□□□□□ -0.62
VPS28-204ENST00000526054 RAD54LQ92698 747 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 KIFAP3Q92845 792 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 TIPINQ9BVW5 301 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 RSAD1Q9HA92 442 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 FAM13BQ9NYF5 915 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 KCND2Q9NZV8 630 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 DNAJB4Q9UDY4 337 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 PCDHA7Q9UN72 937 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 SORCS3Q9UPU3 1222 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 PCDHB2Q9Y5E7 798 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 IRAK3Q9Y616 596 aa11.18□□□□□ -0.62
VPS28-204ENST00000526054 TDRD15B5MCY1 1934 aaKnown RBP11.17□□□□□ -0.62
VPS28-204ENST00000526054 CNTNAP2Q9UHC6 1331 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 SPDYE4A6NLX3 237 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 B4GALT3O60512 393 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 OFD1O75665 1012 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 ERLIN2O94905 339 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 WEE2P0C1S8 567 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 SRGAP2CP0DJJ0 459 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 EPCAMP16422 314 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 ARL2P36404 184 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 SLC12A3P55017 1021 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 VCPP55072 806 aaKnown RBP11.17□□□□□ -0.62
VPS28-204ENST00000526054 PPP2R5AQ15172 486 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 PTPN14Q15678 1187 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 AXDND1Q5T1B0 1012 aaPredicted RBP11.17□□□□□ -0.62
VPS28-204ENST00000526054 RINT1Q6NUQ1 792 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 C12orf76Q8N812 135 aaPredicted RBP11.17□□□□□ -0.62
VPS28-204ENST00000526054 RNF149Q8NC42 400 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 PRPF31Q8WWY3 499 aaKnown RBP11.17□□□□□ -0.62
VPS28-204ENST00000526054 LARP4BQ92615 738 aaKnown RBP11.17□□□□□ -0.62
VPS28-204ENST00000526054 CHAMP1Q96JM3 812 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 IFT74Q96LB3 600 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 DRC1Q96MC2 740 aa11.17□□□□□ -0.62
VPS28-204ENST00000526054 FAM193BQ96PV7 902 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms