RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 EPC1Q9H2F5 836 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 SLC2A4RGQ9NR83 387 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 DNAJC28Q9NX36 388 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 ATP8A1Q9Y2Q0 1164 aa5.56□□□□□ -1.52
CD44-217ENST00000525348 NR4A1P22736 598 aa5.55□□□□□ -1.52
CD44-217ENST00000525348 ZFP36P26651 326 aaKnown RBP5.55□□□□□ -1.52
CD44-217ENST00000525348 FAPQ12884 760 aa5.55□□□□□ -1.52
CD44-217ENST00000525348 INAVAQ3KP66 663 aa5.55□□□□□ -1.52
CD44-217ENST00000525348 SYT12Q8IV01 421 aa5.55□□□□□ -1.52
CD44-217ENST00000525348 TRMT2AQ8IZ69 625 aaKnown RBP5.55□□□□□ -1.52
CD44-217ENST00000525348 GPR156Q8NFN8 814 aa5.55□□□□□ -1.52
CD44-217ENST00000525348 FBXO18Q8NFZ0 1043 aa5.55□□□□□ -1.52
CD44-217ENST00000525348 SLC2A13Q96QE2 648 aa5.55□□□□□ -1.52
CD44-217ENST00000525348 CDC5LQ99459 802 aaKnown RBP5.55□□□□□ -1.52
CD44-217ENST00000525348 ACE2Q9BYF1 805 aaPredicted RBP5.55□□□□□ -1.52
CD44-217ENST00000525348 KCNH6Q9H252 994 aa5.55□□□□□ -1.52
CD44-217ENST00000525348 TMX1Q9H3N1 280 aa5.55□□□□□ -1.52
CD44-217ENST00000525348 PARPBPQ9NWS1 579 aa5.55□□□□□ -1.52
CD44-217ENST00000525348 SLC5A4Q9NY91 659 aa5.55□□□□□ -1.52
CD44-217ENST00000525348 GPRC5BQ9NZH0 403 aa5.55□□□□□ -1.52
CD44-217ENST00000525348 MCM8Q9UJA3 840 aa5.55□□□□□ -1.52
CD44-217ENST00000525348 GOLGA6L6A8MZA4 724 aa5.54□□□□□ -1.52
CD44-217ENST00000525348 AKR1B10O60218 316 aa5.54□□□□□ -1.52
CD44-217ENST00000525348 CRHR1P34998 444 aa5.54□□□□□ -1.52
CD44-217ENST00000525348 IARSP41252 1262 aaKnown RBP5.54□□□□□ -1.52
CD44-217ENST00000525348 KLF1Q13351 362 aaPredicted RBP5.54□□□□□ -1.52
CD44-217ENST00000525348 VPS72Q15906 364 aa5.54□□□□□ -1.52
CD44-217ENST00000525348 RABL3Q5HYI8 236 aa5.54□□□□□ -1.52
CD44-217ENST00000525348 FAM83AQ86UY5 434 aa5.54□□□□□ -1.52
CD44-217ENST00000525348 FATE1Q969F0 183 aa5.54□□□□□ -1.52
CD44-217ENST00000525348 PCED1AQ9H1Q7 454 aa5.54□□□□□ -1.52
CD44-217ENST00000525348 GREM2Q9H772 168 aa5.54□□□□□ -1.52
CD44-217ENST00000525348 MMRN2Q9H8L6 949 aa5.54□□□□□ -1.52
CD44-217ENST00000525348 LEFTY2O00292 366 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 MTHFD2P13995 350 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 AGXTP21549 392 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 APOBEC3AP31941 199 aaPredicted RBP5.53□□□□□ -1.52
CD44-217ENST00000525348 GDF5P43026 501 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 MCAMP43121 646 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 EVA1CP58658 441 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 SEPT2Q15019 361 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 METTL24Q5JXM2 366 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 RNF187Q5TA31 235 aaPredicted RBP5.53□□□□□ -1.52
CD44-217ENST00000525348 NECAB2Q7Z6G3 386 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 OR2I1PQ8NGU4 316 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 SLC35B2Q8TB61 432 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 ZNF483Q8TF39 744 aaPredicted RBP5.53□□□□□ -1.52
CD44-217ENST00000525348 PAWRQ96IZ0 340 aaKnown RBP5.53□□□□□ -1.52
CD44-217ENST00000525348 ZNF768Q9H5H4 540 aaKnown RBP5.53□□□□□ -1.52
CD44-217ENST00000525348 ZNF277Q9NRM2 450 aaPredicted RBP5.53□□□□□ -1.52
CD44-217ENST00000525348 SORCS3Q9UPU3 1222 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 PCDHGA2Q9Y5H1 932 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 GPR45Q9Y5Y3 372 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 ATRNL1Q5VV63 1379 aa5.53□□□□□ -1.52
CD44-217ENST00000525348 WASHC2AQ641Q2 1341 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 AHRRA9YTQ3 701 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 RPS6KA4O75676 772 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 GASTP01350 101 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 CDK11BP21127 795 aaKnown RBP5.52□□□□□ -1.53
CD44-217ENST00000525348 SREBF1P36956 1147 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 MALLQ13021 153 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 ANO4Q32M45 955 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 MUM1L1Q5H9M0 696 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 MBNL2Q5VZF2 373 aaKnown RBP5.52□□□□□ -1.53
CD44-217ENST00000525348 RNF169Q8NCN4 708 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 OR7D4Q8NG98 312 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 SORCS2Q96PQ0 1159 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 NDC1Q9BTX1 674 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 PUS7LQ9H0K6 701 aaKnown RBP5.52□□□□□ -1.53
CD44-217ENST00000525348 CCDC8Q9H0W5 538 aaPredicted RBP5.52□□□□□ -1.53
CD44-217ENST00000525348 LDAHQ9H6V9 325 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 RBM12Q9NTZ6 932 aaKnown RBP5.52□□□□□ -1.53
CD44-217ENST00000525348 SRRDQ9UH36 339 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 SIK3Q9Y2K2 1263 aa5.52□□□□□ -1.53
CD44-217ENST00000525348 TRIM75PA6NK02 468 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 CXorf49A8MYA2 514 aaPredicted RBP5.51□□□□□ -1.53
CD44-217ENST00000525348 FZD9O00144 591 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 CYR61O00622 381 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 PHF2O75151 1096 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 HSP90B1P14625 803 aaKnown RBP5.51□□□□□ -1.53
CD44-217ENST00000525348 ALOX15P16050 662 aaPredicted RBP5.51□□□□□ -1.53
CD44-217ENST00000525348 ECHS1P30084 290 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 SLC6A9P48067 706 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 FLT3LGP49771 235 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 FAM189BP81408 668 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 ABHD18Q0P651 414 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 MTMR1Q13613 665 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 Q6ZPA2 131 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 ZNF627Q7L945 461 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 ZNF572Q7Z3I7 529 aaPredicted RBP5.51□□□□□ -1.53
CD44-217ENST00000525348 PRPF38AQ8NAV1 312 aaKnown RBP5.51□□□□□ -1.53
CD44-217ENST00000525348 C1orf162Q8NEQ5 155 aaPredicted RBP5.51□□□□□ -1.53
CD44-217ENST00000525348 CPT1CQ8TCG5 803 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 LARP4BQ92615 738 aaKnown RBP5.51□□□□□ -1.53
CD44-217ENST00000525348 CLIP3Q96DZ5 547 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 MENTQ9BUN1 341 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 TEX101Q9BY14 249 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 BCO1Q9HAY6 547 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 SPON1Q9HCB6 807 aa5.51□□□□□ -1.53
CD44-217ENST00000525348 TRHDEQ9UKU6 1024 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms