RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 EEF1DP3Q658K8 133 aa23.02■■□□□ 1.28
VPS28-203ENST00000524521 MRPL43Q8N983 215 aaKnown RBP23.02■■□□□ 1.28
VPS28-203ENST00000524521 C17orf75Q9HAS0 396 aa23.02■■□□□ 1.28
VPS28-203ENST00000524521 CD207Q9UJ71 328 aa23.02■■□□□ 1.28
VPS28-203ENST00000524521 FAM50BQ9Y247 325 aa23.02■■□□□ 1.28
VPS28-203ENST00000524521 RBM19Q9Y4C8 960 aaKnown RBP23.02■■□□□ 1.28
VPS28-203ENST00000524521 NPHP3-ACAD11A0A0J9YXS1 232 aa23.01■■□□□ 1.27
VPS28-203ENST00000524521 GLP2RO95838 553 aa23.01■■□□□ 1.27
VPS28-203ENST00000524521 RBM10P98175 930 aaKnown RBP23.01■■□□□ 1.27
VPS28-203ENST00000524521 SPECC1Q5M775 1068 aa23.01■■□□□ 1.27
VPS28-203ENST00000524521 ATF7IP2Q5U623 682 aa23.01■■□□□ 1.27
VPS28-203ENST00000524521 COLGALT2Q8IYK4 626 aa23.01■■□□□ 1.27
VPS28-203ENST00000524521 TMEM134Q9H6X4 195 aa23.01■■□□□ 1.27
VPS28-203ENST00000524521 SNTG2Q9NY99 539 aa23.01■■□□□ 1.27
VPS28-203ENST00000524521 KCND2Q9NZV8 630 aa23.01■■□□□ 1.27
VPS28-203ENST00000524521 CLEC1BQ9P126 229 aa23.01■■□□□ 1.27
VPS28-203ENST00000524521 BARX2Q9UMQ3 279 aaPredicted RBP23.01■■□□□ 1.27
VPS28-203ENST00000524521 PRG3Q9Y2Y8 225 aaPredicted RBP23.01■■□□□ 1.27
VPS28-203ENST00000524521 VCANP13611 3396 aa23■■□□□ 1.27
VPS28-203ENST00000524521 FSD2A1L4K1 749 aa23■■□□□ 1.27
VPS28-203ENST00000524521 C2orf71A6NGG8 1288 aa23■■□□□ 1.27
VPS28-203ENST00000524521 SLC16A4O15374 487 aa23■■□□□ 1.27
VPS28-203ENST00000524521 PLCG1P19174 1290 aa23■■□□□ 1.27
VPS28-203ENST00000524521 CACNB1Q02641 598 aaPredicted RBP23■■□□□ 1.27
VPS28-203ENST00000524521 ARSHQ5FYA8 562 aa23■■□□□ 1.27
VPS28-203ENST00000524521 GSTCDQ8NEC7 633 aa23■■□□□ 1.27
VPS28-203ENST00000524521 AUTS2Q8WXX7 1259 aa23■■□□□ 1.27
VPS28-203ENST00000524521 EPSTI1Q96J88 318 aa23■■□□□ 1.27
VPS28-203ENST00000524521 RPS6KC1Q96S38 1066 aa23■■□□□ 1.27
VPS28-203ENST00000524521 NTPCRQ9BSD7 190 aaKnown RBP23■■□□□ 1.27
VPS28-203ENST00000524521 ZBP1Q9H171 429 aa23■■□□□ 1.27
VPS28-203ENST00000524521 ARHGAP28Q9P2N2 729 aa23■■□□□ 1.27
VPS28-203ENST00000524521 KCNG1Q9UIX4 513 aa23■■□□□ 1.27
VPS28-203ENST00000524521 FBXO2Q9UK22 296 aaPredicted RBP23■■□□□ 1.27
VPS28-203ENST00000524521 SRPRBQ9Y5M8 271 aaKnown RBP23■■□□□ 1.27
VPS28-203ENST00000524521 XIRP2A4UGR9 3374 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 NR1I2O75469 434 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 PLS3P13797 630 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 SMTNP53814 917 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 DSC1Q08554 894 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 MCM6Q14566 821 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 LLGL2Q6P1M3 1020 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 USP49Q70CQ1 688 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 APBB1IPQ7Z5R6 666 aaPredicted RBP22.99■■□□□ 1.27
VPS28-203ENST00000524521 GPBP1Q86WP2 473 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 FAM178BQ8IXR5 827 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 TMEM87AQ8NBN3 555 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 VN1R2Q8NFZ6 395 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 LRRC15Q8TF66 581 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 MSLNLQ96KJ4 702 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 CLIC6Q96NY7 704 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 USP28Q96RU2 1077 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 CCSER1Q9C0I3 900 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 BLOC1S4Q9NUP1 217 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 TNFSF13BQ9Y275 285 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 GDAQ9Y2T3 454 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 PHLPP2Q6ZVD8 1323 aa22.99■■□□□ 1.27
VPS28-203ENST00000524521 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.98■■□□□ 1.27
VPS28-203ENST00000524521 MBTPS2O43462 519 aa22.98■■□□□ 1.27
VPS28-203ENST00000524521 CTSAP10619 480 aa22.98■■□□□ 1.27
VPS28-203ENST00000524521 DCAF4L1Q3SXM0 396 aa22.98■■□□□ 1.27
VPS28-203ENST00000524521 FOXD4L5Q5VV16 416 aaPredicted RBP22.98■■□□□ 1.27
VPS28-203ENST00000524521 TAS1R3Q7RTX0 852 aa22.98■■□□□ 1.27
VPS28-203ENST00000524521 SPRYD3Q8NCJ5 442 aa22.98■■□□□ 1.27
VPS28-203ENST00000524521 SPIRE2Q8WWL2 714 aa22.98■■□□□ 1.27
VPS28-203ENST00000524521 FOXD4L4Q8WXT5 416 aaPredicted RBP22.98■■□□□ 1.27
VPS28-203ENST00000524521 RAD54LQ92698 747 aa22.98■■□□□ 1.27
VPS28-203ENST00000524521 ACO2Q99798 780 aaKnown RBP22.98■■□□□ 1.27
VPS28-203ENST00000524521 VN1R3Q9BXE9 311 aa22.98■■□□□ 1.27
VPS28-203ENST00000524521 MRPL4Q9BYD3 311 aaKnown RBP22.98■■□□□ 1.27
VPS28-203ENST00000524521 TDRD15B5MCY1 1934 aaKnown RBP22.98■■□□□ 1.27
VPS28-203ENST00000524521 NCOR1O75376 2440 aa22.97■■□□□ 1.27
VPS28-203ENST00000524521 RECQL4O94761 1208 aa22.97■■□□□ 1.27
VPS28-203ENST00000524521 SRGAP2BP0DMP2 458 aa22.97■■□□□ 1.27
VPS28-203ENST00000524521 GRIK3Q13003 919 aa22.97■■□□□ 1.27
VPS28-203ENST00000524521 SMAD4Q13485 552 aaKnown RBP22.97■■□□□ 1.27
VPS28-203ENST00000524521 SLC39A14Q15043 492 aa22.97■■□□□ 1.27
VPS28-203ENST00000524521 TARS2Q9BW92 718 aaKnown RBP22.97■■□□□ 1.27
VPS28-203ENST00000524521 COLEC11Q9BWP8 271 aa22.97■■□□□ 1.27
VPS28-203ENST00000524521 LARSQ9P2J5 1176 aaKnown RBP22.97■■□□□ 1.27
VPS28-203ENST00000524521 STK39Q9UEW8 545 aa22.97■■□□□ 1.27
VPS28-203ENST00000524521 CCDC39Q9UFE4 941 aa22.97■■□□□ 1.27
VPS28-203ENST00000524521 ZMYM2Q9UBW7 1377 aa22.97■■□□□ 1.27
VPS28-203ENST00000524521 CLASP2O75122 1294 aaKnown RBP22.96■■□□□ 1.27
VPS28-203ENST00000524521 KRT18P05783 430 aaKnown RBP22.96■■□□□ 1.27
VPS28-203ENST00000524521 DDIT3P35638 169 aa22.96■■□□□ 1.27
VPS28-203ENST00000524521 STRN3Q13033 797 aa22.96■■□□□ 1.27
VPS28-203ENST00000524521 COASYQ13057 564 aa22.96■■□□□ 1.27
VPS28-203ENST00000524521 KCNC3Q14003 757 aa22.96■■□□□ 1.27
VPS28-203ENST00000524521 GIT2Q14161 759 aa22.96■■□□□ 1.27
VPS28-203ENST00000524521 SMAD2Q15796 467 aaKnown RBP22.96■■□□□ 1.27
VPS28-203ENST00000524521 TMEM161BQ8NDZ6 487 aa22.96■■□□□ 1.27
VPS28-203ENST00000524521 LARP4BQ92615 738 aaKnown RBP22.96■■□□□ 1.27
VPS28-203ENST00000524521 REEP2Q9BRK0 252 aa22.96■■□□□ 1.27
VPS28-203ENST00000524521 TCHPQ9BT92 498 aa22.96■■□□□ 1.27
VPS28-203ENST00000524521 MARCH5Q9NX47 278 aa22.96■■□□□ 1.27
VPS28-203ENST00000524521 TFIP11Q9UBB9 837 aaKnown RBP22.96■■□□□ 1.27
VPS28-203ENST00000524521 DAXXQ9UER7 740 aaPredicted RBP22.96■■□□□ 1.27
VPS28-203ENST00000524521 ODF2LQ9ULJ1 636 aa22.96■■□□□ 1.27
VPS28-203ENST00000524521 IRAK3Q9Y616 596 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms