RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 RPUSD2Q8IZ73 545 aaKnown RBP17.77■□□□□ 0.44
LSM1-204ENST00000522515 CEP120Q8N960 986 aa17.77■□□□□ 0.44
LSM1-204ENST00000522515 MSTO1Q9BUK6 570 aa17.77■□□□□ 0.44
LSM1-204ENST00000522515 NAT10Q9H0A0 1025 aaKnown RBP17.77■□□□□ 0.44
LSM1-204ENST00000522515 TSPY26PQ9H489 355 aa17.77■□□□□ 0.44
LSM1-204ENST00000522515 DMAC2Q9NW81 257 aa17.77■□□□□ 0.44
LSM1-204ENST00000522515 HSPBP1Q9NZL4 362 aa17.77■□□□□ 0.44
LSM1-204ENST00000522515 AGO2Q9UKV8 859 aaKnown RBP17.77■□□□□ 0.44
LSM1-204ENST00000522515 FAM189A1O60320 539 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 PFKMP08237 780 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 MCF2P10911 925 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 NR2F2P24468 414 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 EPHB4P54760 987 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 PPIGQ13427 754 aaKnown RBP eCLIP17.76■□□□□ 0.43
LSM1-204ENST00000522515 ADAM9Q13443 819 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 DCAF4L1Q3SXM0 396 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 SEZ6Q53EL9 994 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 FOXR2Q6PJQ5 311 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 SLC9A9Q8IVB4 645 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 THNSL1Q8IYQ7 743 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 TMEM174Q8WUU8 243 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 SAAL1Q96ER3 474 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 ANP32EQ9BTT0 268 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 TRAIPQ9BWF2 469 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 TSPYL2Q9H2G4 693 aaPredicted RBP17.76■□□□□ 0.43
LSM1-204ENST00000522515 RGS18Q9NS28 235 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 FAM105AQ9NUU6 356 aa17.76■□□□□ 0.43
LSM1-204ENST00000522515 GOLGA8IPA6NC78 632 aa17.75■□□□□ 0.43
LSM1-204ENST00000522515 GOLGA8JA6NMD2 632 aa17.75■□□□□ 0.43
LSM1-204ENST00000522515 ENPP3O14638 875 aa17.75■□□□□ 0.43
LSM1-204ENST00000522515 OGTO15294 1046 aa17.75■□□□□ 0.43
LSM1-204ENST00000522515 RGS19P49795 217 aa17.75■□□□□ 0.43
LSM1-204ENST00000522515 FKBP3Q00688 224 aaKnown RBP17.75■□□□□ 0.43
LSM1-204ENST00000522515 ZBTB41Q5SVQ8 909 aa17.75■□□□□ 0.43
LSM1-204ENST00000522515 CSGALNACT2Q8N6G5 542 aa17.75■□□□□ 0.43
LSM1-204ENST00000522515 ENOX1Q8TC92 643 aaKnown RBP17.75■□□□□ 0.43
LSM1-204ENST00000522515 LBHD1Q9BQE6 289 aaPredicted RBP17.75■□□□□ 0.43
LSM1-204ENST00000522515 BPIFA3Q9BQP9 254 aa17.75■□□□□ 0.43
LSM1-204ENST00000522515 TRIM6Q9C030 488 aaPredicted RBP17.75■□□□□ 0.43
LSM1-204ENST00000522515 NXF3Q9H4D5 531 aaKnown RBP17.75■□□□□ 0.43
LSM1-204ENST00000522515 HES2Q9Y543 173 aa17.75■□□□□ 0.43
LSM1-204ENST00000522515 IPPQ9Y573 584 aa17.75■□□□□ 0.43
LSM1-204ENST00000522515 PCDHB2Q9Y5E7 798 aa17.75■□□□□ 0.43
LSM1-204ENST00000522515 A0A0U1RQF3 1178 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.74■□□□□ 0.43
LSM1-204ENST00000522515 C9IYK1 514 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 RPL13P26373 211 aaKnown RBP17.74■□□□□ 0.43
LSM1-204ENST00000522515 CASP4P49662 377 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 ACOT2P49753 483 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 OSTNP61366 133 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 IKBKEQ14164 716 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 MYBPC2Q14324 1141 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 CRELD2Q6UXH1 353 aaPredicted RBP17.74■□□□□ 0.43
LSM1-204ENST00000522515 LRRC55Q6ZSA7 311 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 SLC24A5Q71RS6 500 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 ZC3H3Q8IXZ2 948 aaKnown RBP17.74■□□□□ 0.43
LSM1-204ENST00000522515 TMEM192Q8IY95 271 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 GPD1LQ8N335 351 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 AOPEPQ8N6M6 819 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 XXYLT1Q8NBI6 393 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 SMG8Q8ND04 991 aaKnown RBP17.74■□□□□ 0.43
LSM1-204ENST00000522515 NOC3LQ8WTT2 800 aaKnown RBP17.74■□□□□ 0.43
LSM1-204ENST00000522515 SRRTQ9BXP5 876 aaKnown RBP17.74■□□□□ 0.43
LSM1-204ENST00000522515 CBX8Q9HC52 389 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 CETN3O15182 167 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 EXOC3O60645 756 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 CAVIN2O95810 425 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 LDHAP00338 332 aaKnown RBP17.74■□□□□ 0.43
LSM1-204ENST00000522515 IBSPP21815 317 aaPredicted RBP17.74■□□□□ 0.43
LSM1-204ENST00000522515 TNFSF9P41273 254 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 MYL5Q02045 173 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 NCAPHQ15003 741 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 IQCB1Q15051 598 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 SPATA1Q5VX52 437 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 FAM43BQ6ZT52 329 aaPredicted RBP17.74■□□□□ 0.43
LSM1-204ENST00000522515 ZNF365Q70YC5 407 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 APBB1IPQ7Z5R6 666 aaPredicted RBP17.74■□□□□ 0.43
LSM1-204ENST00000522515 DHX40Q8IX18 779 aaKnown RBP17.74■□□□□ 0.43
LSM1-204ENST00000522515 RDH13Q8NBN7 331 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 FBXL18Q96ME1 805 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 FAM213AQ9BRX8 229 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 RNF39Q9H2S5 420 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 SNTG2Q9NY99 539 aa17.74■□□□□ 0.43
LSM1-204ENST00000522515 KIAA0391O15091 583 aaKnown RBP17.73■□□□□ 0.43
LSM1-204ENST00000522515 EXTL3O43909 919 aa17.73■□□□□ 0.43
LSM1-204ENST00000522515 ZNF623O75123 536 aa17.73■□□□□ 0.43
LSM1-204ENST00000522515 AKAP3O75969 853 aa17.73■□□□□ 0.43
LSM1-204ENST00000522515 STAG3L1P0CL83 205 aa17.73■□□□□ 0.43
LSM1-204ENST00000522515 ATF7P17544 494 aaPredicted RBP17.73■□□□□ 0.43
LSM1-204ENST00000522515 GRM5P41594 1212 aa17.73■□□□□ 0.43
LSM1-204ENST00000522515 RAB27AP51159 221 aa17.73■□□□□ 0.43
LSM1-204ENST00000522515 FAM189BP81408 668 aa17.73■□□□□ 0.43
LSM1-204ENST00000522515 TPD52L1Q16890 204 aaPredicted RBP17.73■□□□□ 0.43
LSM1-204ENST00000522515 CEP135Q66GS9 1140 aa17.73■□□□□ 0.43
LSM1-204ENST00000522515 CBWD2Q8IUF1 395 aa17.73■□□□□ 0.43
LSM1-204ENST00000522515 C1orf112Q9NSG2 853 aa17.73■□□□□ 0.43
LSM1-204ENST00000522515 CPSF3Q9UKF6 684 aaKnown RBP17.73■□□□□ 0.43
LSM1-204ENST00000522515 NFE2L3Q9Y4A8 694 aa17.73■□□□□ 0.43
LSM1-204ENST00000522515 MICAL3Q7RTP6 2002 aa17.72■□□□□ 0.43
LSM1-204ENST00000522515 ABHD14A-ACY1A0A1B0GW23 586 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms