RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 TMEM184AQ6ZMB5 413 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 ADGRD2Q7Z7M1 963 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 DDX53Q86TM3 631 aaKnown RBP10.69□□□□□ -0.7
RNF4-221ENST00000513643 MICALL1Q8N3F8 863 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 LARP4BQ92615 738 aaKnown RBP10.69□□□□□ -0.7
RNF4-221ENST00000513643 DNAJC19Q96DA6 116 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 IGSF21Q96ID5 467 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 CDK5RAP3Q96JB5 506 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 ZFP42Q96MM3 310 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 CXCL16Q9H2A7 254 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 UBE2ZQ9H832 354 aaPredicted RBP10.69□□□□□ -0.7
RNF4-221ENST00000513643 TLR9Q9NR96 1032 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 PCDHGC5Q9Y5F6 944 aa10.69□□□□□ -0.7
RNF4-221ENST00000513643 FRMD3A2A2Y4 597 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 MYMKA6NI61 221 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 CCDC169A6NNP5 214 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 PTGESO14684 152 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 SLC16A4O15374 487 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 AKAP5P24588 427 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 MLH1P40692 756 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 GTF2BQ00403 316 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 DCAF4L1Q3SXM0 396 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 CNNM4Q6P4Q7 775 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 ZPBP2Q6X784 338 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 GPBP1Q86WP2 473 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 THNSL1Q8IYQ7 743 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 EFHBQ8N7U6 833 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 MRPL43Q8N983 215 aaKnown RBP10.68□□□□□ -0.7
RNF4-221ENST00000513643 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.68□□□□□ -0.7
RNF4-221ENST00000513643 TARS2Q9BW92 718 aaKnown RBP10.68□□□□□ -0.7
RNF4-221ENST00000513643 COL25A1Q9BXS0 654 aaPredicted RBP10.68□□□□□ -0.7
RNF4-221ENST00000513643 MRPL4Q9BYD3 311 aaKnown RBP10.68□□□□□ -0.7
RNF4-221ENST00000513643 NGRNQ9NPE2 291 aaKnown RBP10.68□□□□□ -0.7
RNF4-221ENST00000513643 KMT5AQ9NQR1 393 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 MARCH5Q9NX47 278 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 LARSQ9P2J5 1176 aaKnown RBP10.68□□□□□ -0.7
RNF4-221ENST00000513643 CCDC39Q9UFE4 941 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 PUF60Q9UHX1 559 aaKnown RBP10.68□□□□□ -0.7
RNF4-221ENST00000513643 INPP5FQ9Y2H2 1132 aa10.68□□□□□ -0.7
RNF4-221ENST00000513643 C2orf71A6NGG8 1288 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 HIDE1A8MVS5 230 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 NT5C1B-RDH14C9J2C7 533 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 NRP1O14786 923 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 FAM189A1O60320 539 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 CUTAO60888 179 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 PPP1R37O75864 691 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 GLP2RO95838 553 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 POMCP01189 267 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 ALDH2P05091 517 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 SSBP05455 408 aaKnown RBP eCLIP10.67□□□□□ -0.7
RNF4-221ENST00000513643 ADRB2P07550 413 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 HSP90AA1P07900 732 aaKnown RBP10.67□□□□□ -0.7
RNF4-221ENST00000513643 MCF2P10911 925 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 GTF2F1P35269 517 aaKnown RBP eCLIP10.67□□□□□ -0.79e-9■■■■■ 35.7
RNF4-221ENST00000513643 GRM5P41594 1212 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 SCNN1GP51170 649 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 SMTNP53814 917 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 CACNB1Q02641 598 aaPredicted RBP10.67□□□□□ -0.7
RNF4-221ENST00000513643 KRT17Q04695 432 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 DNM1Q05193 864 aaKnown RBP10.67□□□□□ -0.7
RNF4-221ENST00000513643 DLX2Q07687 328 aaPredicted RBP10.67□□□□□ -0.7
RNF4-221ENST00000513643 RAD51AP2Q09MP3 1159 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 STK38Q15208 465 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 DUSP6Q16828 381 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 SPOUT1Q5T280 376 aaKnown RBP10.67□□□□□ -0.7
RNF4-221ENST00000513643 RRAGBQ5VZM2 374 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 CCDC73Q6ZRK6 1079 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 HAUS6Q7Z4H7 955 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 SPRYD3Q8NCJ5 442 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 VN1R2Q8NFZ6 395 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 URGCPQ8TCY9 931 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 MSLNLQ96KJ4 702 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 CDCA3Q99618 268 aaPredicted RBP10.67□□□□□ -0.7
RNF4-221ENST00000513643 HAPLN2Q9GZV7 340 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 ZBP1Q9H171 429 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 CDT1Q9H211 546 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 PARVGQ9HBI0 331 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 KBTBD4Q9NVX7 518 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 SNTG2Q9NY99 539 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 CLEC1BQ9P126 229 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 STK39Q9UEW8 545 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 PCDHA7Q9UN72 937 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 TRIOO75962 3097 aa10.67□□□□□ -0.7
RNF4-221ENST00000513643 PLXNA4Q9HCM2 1894 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 H0YCG3 227 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 TRAK2O60296 914 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 ZC3H11AO75152 810 aaKnown RBP eCLIP10.66□□□□□ -0.7
RNF4-221ENST00000513643 TOM1L1O75674 476 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 RECQL4O94761 1208 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 CTSAP10619 480 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 KCNQ1P51787 676 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 MCL1Q07820 350 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 GRIK3Q13003 919 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 AAK1Q2M2I8 961 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 CD300LGQ6UXG3 332 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 ZNF720Q7Z2F6 126 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 GPR65Q8IYL9 337 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 HACE1Q8IYU2 909 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 CEP120Q8N960 986 aa10.66□□□□□ -0.7
RNF4-221ENST00000513643 KCNG4Q8TDN1 519 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms