RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ADAM23O75077 832 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 ALDH2P05091 517 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 PPP1R2P41236 205 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 EIF2B2P49770 351 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 TNFAIP8L3Q5GJ75 292 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 ZNF280DQ6N043 979 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 PPP1R2P3Q6NXS1 205 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 RAPH1Q70E73 1250 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 NUP93Q8N1F7 819 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 SETDB2Q96T68 719 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 LRRC27Q9C0I9 530 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 SEMA6BQ9H3T3 888 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 TLE6Q9H808 572 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 LIN28AQ9H9Z2 209 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 MYPNQ86TC9 1320 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 A0A087WZG4 1122 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 A0A0G2JND7 137 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 POTEFA5A3E0 1075 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 BIRC5O15392 142 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 HAUS5O94927 633 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 HOXB7P09629 217 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 ESRRAP11474 423 aaPredicted RBP12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 SCG2P13521 617 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 WDR4P57081 412 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 PTENP60484 403 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 CYP4A11Q02928 519 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 OVGP1Q12889 678 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 DLG1Q12959 904 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 LLGL1Q15334 1064 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 ASIC2Q16515 512 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 LRRC24Q50LG9 513 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 NAALADL2Q58DX5 795 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 MFSD5Q6N075 450 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 AADACL2Q6P093 401 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 TMTC3Q6ZXV5 915 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 ADAM33Q9BZ11 813 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 CDC42EP4Q9H3Q1 356 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 GRHL1Q9NZI5 618 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 SAP30BPQ9UHR5 308 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 N6AMT1Q9Y5N5 214 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 NUMBLQ9Y6R0 609 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 TTLL13PA6NNM8 815 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 RARGP13631 454 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 PRKCIP41743 596 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 STT3AP46977 705 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 SCARF1Q14162 830 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 HSP90AA5PQ58FG0 334 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 LPCAT4Q643R3 524 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 IFNLR1Q8IU57 520 aaPredicted RBP12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 RAVER1Q8IY67 606 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 ARHGAP24Q8N264 748 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 LRRC57Q8N9N7 239 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 FANCBQ8NB91 859 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 CEP295NLQ96MC4 621 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 TPK1Q9H3S4 243 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 PSTPIP2Q9H939 334 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 TAS2R1Q9NYW7 299 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 AMFRQ9UKV5 643 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 LZTS1Q9Y250 596 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 TIMM22Q9Y584 194 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 NRKQ7Z2Y5 1582 aa12.82□□□□□ -0.36
LIMCH1-213ENST00000511496 DLC1Q96QB1 1528 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 WDR91A4D1P6 747 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 TRMUO75648 421 aaKnown RBP12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 POTEIP0CG38 1075 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 PDK3Q15120 406 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 PAOXQ6QHF9 649 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 PPP1R21Q6ZMI0 780 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 OR6Y1Q8NGX8 325 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 CLPTM1LQ96KA5 538 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 TMEM109Q9BVC6 243 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 ROPN1BQ9BZX4 212 aaPredicted RBP12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 ROPN1Q9HAT0 212 aaPredicted RBP12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 PPM1HQ9ULR3 514 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 C4AP0C0L4 1744 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 C4BP0C0L5 1744 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 PNPLA7Q6ZV29 1317 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 E9PBE3 544 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 HIRAP54198 1017 aaPredicted RBP12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 AP2B1P63010 937 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 NOP14P78316 857 aaKnown RBP12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 PTK2Q05397 1052 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 MAPK7Q13164 816 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 MOGSQ13724 837 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 KYNUQ16719 465 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 METTL21CQ5VZV1 264 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 ALKBH5Q6P6C2 394 aaKnown RBP12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 Q6ZNX1 250 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 TOM1L2Q6ZVM7 507 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 BBS5Q8N3I7 341 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 SCAIQ8N9R8 606 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 NSL1Q96IY1 281 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 PRELID1Q9Y255 219 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 TMEM94Q12767 1356 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 RASA4BC9J798 803 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 SPECC1L-ADORA2AF8WAN1 911 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 MATN2O00339 956 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 ADCY6O43306 1168 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms