RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 GIT2Q14161 759 aa16.62■□□□□ 0.25
USP39-217ENST00000491659 SMAD2Q15796 467 aaKnown RBP16.62■□□□□ 0.25
USP39-217ENST00000491659 DCAF4L1Q3SXM0 396 aa16.62■□□□□ 0.25
USP39-217ENST00000491659 ATF7IP2Q5U623 682 aa16.62■□□□□ 0.25
USP39-217ENST00000491659 C1orf186Q6ZWK4 172 aa16.62■□□□□ 0.25
USP39-217ENST00000491659 HSCBQ8IWL3 235 aa16.62■□□□□ 0.25
USP39-217ENST00000491659 MRPL43Q8N983 215 aaKnown RBP16.62■□□□□ 0.25
USP39-217ENST00000491659 SYT2Q8N9I0 419 aaPredicted RBP16.62■□□□□ 0.25
USP39-217ENST00000491659 BCL7CQ8WUZ0 217 aaPredicted RBP16.62■□□□□ 0.25
USP39-217ENST00000491659 SNX21Q969T3 373 aa16.62■□□□□ 0.25
USP39-217ENST00000491659 KMT5AQ9NQR1 393 aa16.62■□□□□ 0.25
USP39-217ENST00000491659 PRKAG3Q9UGI9 489 aa16.62■□□□□ 0.25
USP39-217ENST00000491659 PRG3Q9Y2Y8 225 aaPredicted RBP16.62■□□□□ 0.25
USP39-217ENST00000491659 NCOR1O75376 2440 aa16.62■□□□□ 0.25
USP39-217ENST00000491659 TTLL13PA6NNM8 815 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 NRP1O14786 923 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 CXCL14O95715 111 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 EDN1P05305 212 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 CTSAP10619 480 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 OR1G1P47890 313 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 SLC12A3P55017 1021 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 DSC1Q08554 894 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 RAD51AP2Q09MP3 1159 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 MAPK7Q13164 816 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 LLGL2Q6P1M3 1020 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 COLGALT2Q8IYK4 626 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 DAW1Q8N136 415 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 SMRP1Q8NCR6 262 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 VN1R2Q8NFZ6 395 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 KLK14Q9P0G3 267 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 KCNG1Q9UIX4 513 aa16.61■□□□□ 0.25
USP39-217ENST00000491659 RBM19Q9Y4C8 960 aaKnown RBP16.61■□□□□ 0.25
USP39-217ENST00000491659 BDP1A6H8Y1 2624 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 STX6O43752 255 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 RECQL4O94761 1208 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 RBM10P98175 930 aaKnown RBP16.6■□□□□ 0.25
USP39-217ENST00000491659 TMEM184AQ6ZMB5 413 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 GJD3Q8N144 294 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 CASP10Q92851 521 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 POP1Q99575 1024 aaKnown RBP16.6■□□□□ 0.25
USP39-217ENST00000491659 MRPL4Q9BYD3 311 aaKnown RBP16.6■□□□□ 0.25
USP39-217ENST00000491659 TMEM134Q9H6X4 195 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 MARCH5Q9NX47 278 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 MIOSQ9NXC5 875 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 SNTG2Q9NY99 539 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 ARHGAP28Q9P2N2 729 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 MTMR6Q9Y217 621 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 USP20Q9Y2K6 914 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 IRAK3Q9Y616 596 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 CLIC4Q9Y696 253 aa16.6■□□□□ 0.25
USP39-217ENST00000491659 HSP90AA1P07900 732 aaKnown RBP16.59■□□□□ 0.25
USP39-217ENST00000491659 PLS3P13797 630 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 SMTNP53814 917 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 GRIN1Q05586 938 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 ZP2Q05996 745 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 KARSQ15046 597 aaKnown RBP16.59■□□□□ 0.25
USP39-217ENST00000491659 NT5DC1Q5TFE4 455 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 EEF1DP3Q658K8 133 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 ANKRD54Q6NXT1 300 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 ADHFE1Q8IWW8 467 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 AUTS2Q8WXX7 1259 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 HERC2P3Q9BVR0 1158 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 COLEC11Q9BWP8 271 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 VN1R3Q9BXE9 311 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 ZSCAN16Q9H4T2 348 aaPredicted RBP16.59■□□□□ 0.25
USP39-217ENST00000491659 TNFSF13BQ9Y275 285 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 HCFC2Q9Y5Z7 792 aa16.59■□□□□ 0.25
USP39-217ENST00000491659 SFI1A8K8P3 1242 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 H0YCG3 227 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 SLC16A4O15374 487 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 CLASP2O75122 1294 aaKnown RBP16.58■□□□□ 0.24
USP39-217ENST00000491659 SOD2P04179 222 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 URODP06132 367 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 HOXB8P17481 243 aaPredicted RBP16.58■□□□□ 0.24
USP39-217ENST00000491659 PLCG1P19174 1290 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 TXLNAP40222 546 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 STRN3Q13033 797 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 KCNC3Q14003 757 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 DHX8Q14562 1220 aaKnown RBP16.58■□□□□ 0.24
USP39-217ENST00000491659 PTPAQ15257 358 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 PTPN14Q15678 1187 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 ZNF568Q3ZCX4 644 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 FAM173BQ6P4H8 233 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 GPBP1Q86WP2 473 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 GSTCDQ8NEC7 633 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 SPIRE2Q8WWL2 714 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 EMILIN2Q9BXX0 1053 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 LARSQ9P2J5 1176 aaKnown RBP16.58■□□□□ 0.24
USP39-217ENST00000491659 ODF2LQ9ULJ1 636 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 SSX2IPQ9Y2D8 614 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 GDAQ9Y2T3 454 aa16.58■□□□□ 0.24
USP39-217ENST00000491659 USP15Q9Y4E8 981 aaPredicted RBP16.58■□□□□ 0.24
USP39-217ENST00000491659 CITO14578 2027 aa16.57■□□□□ 0.24
USP39-217ENST00000491659 TRIP11Q15643 1979 aa16.57■□□□□ 0.24
USP39-217ENST00000491659 KRT18P05783 430 aaKnown RBP16.57■□□□□ 0.24
USP39-217ENST00000491659 MARCKSP29966 332 aaPredicted RBP16.57■□□□□ 0.24
USP39-217ENST00000491659 GLUD2P49448 558 aa16.57■□□□□ 0.24
USP39-217ENST00000491659 CACNB1Q02641 598 aaPredicted RBP16.57■□□□□ 0.24
USP39-217ENST00000491659 CEBPZQ03701 1054 aaKnown RBP16.57■□□□□ 0.24
USP39-217ENST00000491659 TUSC3Q13454 348 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms