RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 DNAJC10Q8IXB1 793 aa4.46□□□□□ -1.7
CPSF3-205ENST00000489629 DCLRE1CQ96SD1 692 aaKnown RBP4.46□□□□□ -1.7
CPSF3-205ENST00000489629 EIF2B4Q9UI10 523 aaKnown RBP4.46□□□□□ -1.7
CPSF3-205ENST00000489629 CLCA2Q9UQC9 943 aa4.46□□□□□ -1.7
CPSF3-205ENST00000489629 HDAC5Q9UQL6 1122 aa4.46□□□□□ -1.7
CPSF3-205ENST00000489629 TBX22Q9Y458 520 aa4.46□□□□□ -1.7
CPSF3-205ENST00000489629 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.45□□□□□ -1.7
CPSF3-205ENST00000489629 PRR5-ARHGAP8B1AHC4 643 aa4.45□□□□□ -1.7
CPSF3-205ENST00000489629 NEMP1O14524 444 aa4.45□□□□□ -1.7
CPSF3-205ENST00000489629 ITGA10O75578 1167 aa4.45□□□□□ -1.7
CPSF3-205ENST00000489629 ZSCAN20P17040 1043 aaPredicted RBP4.45□□□□□ -1.7
CPSF3-205ENST00000489629 LAG3P18627 525 aa4.45□□□□□ -1.7
CPSF3-205ENST00000489629 ID4P47928 161 aa4.45□□□□□ -1.7
CPSF3-205ENST00000489629 FSCN1Q16658 493 aaKnown RBP4.45□□□□□ -1.7
CPSF3-205ENST00000489629 METRNLQ641Q3 311 aa4.45□□□□□ -1.7
CPSF3-205ENST00000489629 GDF7Q7Z4P5 450 aa4.45□□□□□ -1.7
CPSF3-205ENST00000489629 CLRN3Q8NCR9 226 aa4.45□□□□□ -1.7
CPSF3-205ENST00000489629 EAF2Q96CJ1 260 aaPredicted RBP4.45□□□□□ -1.7
CPSF3-205ENST00000489629 TOPORSQ9NS56 1045 aaPredicted RBP4.45□□□□□ -1.7
CPSF3-205ENST00000489629 GPRC5DQ9NZD1 345 aa4.45□□□□□ -1.7
CPSF3-205ENST00000489629 TRPM5Q9NZQ8 1165 aa4.45□□□□□ -1.7
CPSF3-205ENST00000489629 PACSIN3Q9UKS6 424 aa4.45□□□□□ -1.7
CPSF3-205ENST00000489629 TBKBP1A7MCY6 615 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 DIRC3C9JPN6 131 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 ZEB2O60315 1214 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 LPXNO60711 386 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 PRAMEF4O60810 478 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 GASTP01350 101 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 LMNAP02545 664 aaKnown RBP4.44□□□□□ -1.7
CPSF3-205ENST00000489629 GYS2P54840 703 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 RNASE9P60153 205 aaKnown RBP4.44□□□□□ -1.7
CPSF3-205ENST00000489629 NHLH2Q02577 135 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 UGT8Q16880 541 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 BMT2Q1RMZ1 405 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 BEAN1Q3B7T3 259 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 ARHGEF19Q8IW93 802 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 USP7Q93009 1102 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 CEP95Q96GE4 821 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 FAM193BQ96PV7 902 aaPredicted RBP4.44□□□□□ -1.7
CPSF3-205ENST00000489629 CDC5LQ99459 802 aaKnown RBP4.44□□□□□ -1.7
CPSF3-205ENST00000489629 TEX101Q9BY14 249 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 IFT22Q9H7X7 185 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 AKIP1Q9NQ31 210 aa4.44□□□□□ -1.7
CPSF3-205ENST00000489629 GAGE12BA1L429 117 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 GAGE12HA6NDE8 117 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 B5MCH6 92 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 RNASET2O00584 256 aaKnown RBP4.43□□□□□ -1.7
CPSF3-205ENST00000489629 ZNF185O15231 689 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 B3GALT2O43825 422 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 ULK1O75385 1050 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 NCR1O76036 304 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 RHOBTB3O94955 611 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 BMP5P22003 454 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 CRHR1P34998 444 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 ZEB1P37275 1124 aaPredicted RBP4.43□□□□□ -1.7
CPSF3-205ENST00000489629 SESN3P58005 492 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 TAP1Q03518 808 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 MFSD14BQ5SR56 506 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 PRAMEF14Q5SWL7 426 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 HECTD2Q5U5R9 776 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 DDX46Q7L014 1031 aaKnown RBP4.43□□□□□ -1.7
CPSF3-205ENST00000489629 STRA8Q7Z7C7 330 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 NOP9Q86U38 636 aaKnown RBP4.43□□□□□ -1.7
CPSF3-205ENST00000489629 BEND2Q8NDZ0 799 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 OR10H5Q8NGA6 315 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 MDM1Q8TC05 714 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 PAWRQ96IZ0 340 aaKnown RBP4.43□□□□□ -1.7
CPSF3-205ENST00000489629 ACAP3Q96P50 834 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 TOR3AQ9H497 397 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 SPON1Q9HCB6 807 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 ANKFY1Q9P2R3 1169 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 EDARQ9UNE0 448 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 RPTORQ8N122 1335 aa4.43□□□□□ -1.7
CPSF3-205ENST00000489629 ENPP1P22413 925 aa4.42□□□□□ -1.7
CPSF3-205ENST00000489629 TGM1P22735 817 aa4.42□□□□□ -1.7
CPSF3-205ENST00000489629 BMPR1AP36894 532 aa4.42□□□□□ -1.7
CPSF3-205ENST00000489629 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.42□□□□□ -1.7
CPSF3-205ENST00000489629 PDCD4Q53EL6 469 aaKnown RBP4.42□□□□□ -1.7
CPSF3-205ENST00000489629 FAM102AQ5T9C2 384 aaPredicted RBP4.42□□□□□ -1.7
CPSF3-205ENST00000489629 Q6YL49 198 aa4.42□□□□□ -1.7
CPSF3-205ENST00000489629 TSPEARQ8WU66 669 aa4.42□□□□□ -1.7
CPSF3-205ENST00000489629 ZNF480Q8WV37 535 aa4.42□□□□□ -1.7
CPSF3-205ENST00000489629 PCSK5Q92824 1860 aa4.42□□□□□ -1.7
CPSF3-205ENST00000489629 CRAMP1Q96RY5 1269 aa4.42□□□□□ -1.7
CPSF3-205ENST00000489629 NEU1Q99519 415 aa4.42□□□□□ -1.7
CPSF3-205ENST00000489629 SERHL2Q9H4I8 314 aa4.42□□□□□ -1.7
CPSF3-205ENST00000489629 SYNPO2LQ9H987 977 aa4.42□□□□□ -1.7
CPSF3-205ENST00000489629 SYBUQ9NX95 663 aa4.42□□□□□ -1.7
CPSF3-205ENST00000489629 DPP7Q9UHL4 492 aa4.42□□□□□ -1.7
CPSF3-205ENST00000489629 APOBEC2Q9Y235 224 aaKnown RBP4.42□□□□□ -1.7
CPSF3-205ENST00000489629 MARCH11A6NNE9 402 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 WNT10BO00744 389 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 ADCY6O43306 1168 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 NDUFA10O95299 355 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 RBP3P10745 1247 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 MGAT1P26572 445 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 CANXP27824 592 aaKnown RBP4.41□□□□□ -1.7
CPSF3-205ENST00000489629 FLT3LGP49771 235 aa4.41□□□□□ -1.7
CPSF3-205ENST00000489629 MRPS9P82933 396 aaKnown RBP4.41□□□□□ -1.7
CPSF3-205ENST00000489629 MST1LQ2TV78 715 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms