RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 NEMFO60524 1076 aa13.77□□□□□ -0.21
CPSF3-204ENST00000489403 USO1O60763 962 aaKnown RBP13.77□□□□□ -0.21
CPSF3-204ENST00000489403 N4BP1O75113 896 aaKnown RBP13.77□□□□□ -0.21
CPSF3-204ENST00000489403 MYBP10242 640 aa13.77□□□□□ -0.21
CPSF3-204ENST00000489403 AKAP5P24588 427 aa13.77□□□□□ -0.21
CPSF3-204ENST00000489403 FOSBP53539 338 aa13.77□□□□□ -0.21
CPSF3-204ENST00000489403 DSG1Q02413 1049 aa13.77□□□□□ -0.21
CPSF3-204ENST00000489403 NCBP1Q09161 790 aaKnown RBP13.77□□□□□ -0.21
CPSF3-204ENST00000489403 TDGQ13569 410 aa13.77□□□□□ -0.21
CPSF3-204ENST00000489403 KIAA0319Q5VV43 1072 aa13.77□□□□□ -0.21
CPSF3-204ENST00000489403 CDR2LQ86X02 465 aaPredicted RBP13.77□□□□□ -0.21
CPSF3-204ENST00000489403 DIS3L2Q8IYB7 885 aaKnown RBP13.77□□□□□ -0.21
CPSF3-204ENST00000489403 NSUN7Q8NE18 718 aaKnown RBP13.77□□□□□ -0.21
CPSF3-204ENST00000489403 PIGOQ8TEQ8 1089 aa13.77□□□□□ -0.21
CPSF3-204ENST00000489403 MTMR9Q96QG7 549 aa13.77□□□□□ -0.21
CPSF3-204ENST00000489403 POLR3FQ9H1D9 316 aaPredicted RBP13.77□□□□□ -0.21
CPSF3-204ENST00000489403 KCNK12Q9HB15 430 aa13.77□□□□□ -0.21
CPSF3-204ENST00000489403 DUSP12Q9UNI6 340 aa13.77□□□□□ -0.21
CPSF3-204ENST00000489403 MTCL1Q9Y4B5 1905 aaKnown RBP13.77□□□□□ -0.21
CPSF3-204ENST00000489403 A0A087WWV3 80 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 POTEMA6NI47 508 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 JAK2O60674 1132 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 RFPL2O75678 378 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 NPTXRO95502 500 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 GLUD1P00367 558 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 TXKP42681 527 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 CLCN5P51795 746 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 FUT10Q6P4F1 479 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 SLC27A1Q6PCB7 646 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 HACE1Q8IYU2 909 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 FLCNQ8NFG4 579 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 CCDC43Q96MW1 224 aaKnown RBP13.76□□□□□ -0.21
CPSF3-204ENST00000489403 GPR62Q9BZJ7 368 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 WDR6Q9NNW5 1121 aaKnown RBP13.76□□□□□ -0.21
CPSF3-204ENST00000489403 GPRC5CQ9NQ84 441 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 CHST7Q9NS84 486 aa13.76□□□□□ -0.21
CPSF3-204ENST00000489403 ZMYM2Q9UBW7 1377 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 CLUHO75153 1309 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 PROB1E7EW31 1015 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 NR1I2O75469 434 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 PAPLNO95428 1278 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 NPR3P17342 541 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 ST3GAL1Q11201 340 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 GRIK3Q13003 919 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 CYP26C1Q6V0L0 522 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 MAEAQ7L5Y9 396 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 ASCL5Q7RTU5 278 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 RABGGTAQ92696 567 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 B3GALT6Q96L58 329 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 COLEC11Q9BWP8 271 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 RHOBTB2Q9BYZ6 727 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 TMEM60Q9H2L4 133 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 KLK14Q9P0G3 267 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 CACNG4Q9UBN1 327 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 DPP7Q9UHL4 492 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 ADAM28Q9UKQ2 775 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 CFAP54Q96N23 3096 aa13.75□□□□□ -0.21
CPSF3-204ENST00000489403 A0A1B0GUA9 196 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 LRRIQ4A6NIV6 560 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 TGM5O43548 720 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 PI15O43692 258 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 NARSO43776 548 aaKnown RBP13.74□□□□□ -0.21
CPSF3-204ENST00000489403 SPATA31D3P0C874 917 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 SPATA31C1P0DKV0 1188 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 AOC1P19801 751 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 GBP2P32456 591 aaPredicted RBP13.74□□□□□ -0.21
CPSF3-204ENST00000489403 NBL1P41271 181 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 CDCA2Q69YH5 1023 aaPredicted RBP13.74□□□□□ -0.21
CPSF3-204ENST00000489403 ELMSAN1Q6PJG2 1045 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 SPATA31D4Q6ZUB0 917 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 PALB2Q86YC2 1186 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 GLYCTKQ8IVS8 523 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 HDAC7Q8WUI4 952 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 RSAD2Q8WXG1 361 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 SMG7Q92540 1137 aaKnown RBP13.74□□□□□ -0.21
CPSF3-204ENST00000489403 ZNF707Q96C28 371 aaPredicted RBP13.74□□□□□ -0.21
CPSF3-204ENST00000489403 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.74□□□□□ -0.21
CPSF3-204ENST00000489403 PRMT7Q9NVM4 692 aaPredicted RBP13.74□□□□□ -0.21
CPSF3-204ENST00000489403 FNIP2Q9P278 1114 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 IGSF9Q9P2J2 1179 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 PARP2Q9UGN5 583 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 DOCK8Q8NF50 2099 aa13.74□□□□□ -0.21
CPSF3-204ENST00000489403 CACNA1HO95180 2353 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 TTLL13PA6NNM8 815 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 MED24O75448 989 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 XRCC6P12956 609 aaKnown RBP eCLIP13.73□□□□□ -0.21
CPSF3-204ENST00000489403 RPL17P18621 184 aaKnown RBP13.73□□□□□ -0.21
CPSF3-204ENST00000489403 TRIM29Q14134 588 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 USP41Q3LFD5 358 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 LILRA6Q6PI73 481 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 CATSPER3Q86XQ3 398 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 GPR65Q8IYL9 337 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 SIX5Q8N196 739 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 RIN2Q8WYP3 895 aaPredicted RBP13.73□□□□□ -0.21
CPSF3-204ENST00000489403 STAMQ92783 540 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 PRIMPOLQ96LW4 560 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 MYADMQ96S97 322 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 PAAF1Q9BRP4 392 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 NT5C3AQ9H0P0 336 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 PLEKHA4Q9H4M7 779 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms