RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 SLC24A5Q71RS6 500 aa9.76□□□□□ -0.85
USP4-213ENST00000488520 ASCL5Q7RTU5 278 aa9.76□□□□□ -0.85
USP4-213ENST00000488520 TMC7Q7Z402 723 aa9.76□□□□□ -0.85
USP4-213ENST00000488520 FERMT3Q86UX7 667 aa9.76□□□□□ -0.85
USP4-213ENST00000488520 KIAA0319LQ8IZA0 1049 aa9.76□□□□□ -0.85
USP4-213ENST00000488520 FOXD4L4Q8WXT5 416 aaPredicted RBP9.76□□□□□ -0.85
USP4-213ENST00000488520 MRPS27Q92552 414 aaKnown RBP9.76□□□□□ -0.85
USP4-213ENST00000488520 ZNF396Q96N95 335 aaPredicted RBP9.76□□□□□ -0.85
USP4-213ENST00000488520 CDCA3Q99618 268 aaPredicted RBP9.76□□□□□ -0.85
USP4-213ENST00000488520 OSMRQ99650 979 aa9.76□□□□□ -0.85
USP4-213ENST00000488520 ATP6V0A4Q9HBG4 840 aa9.76□□□□□ -0.85
USP4-213ENST00000488520 C1orf112Q9NSG2 853 aa9.76□□□□□ -0.85
USP4-213ENST00000488520 NXF1Q9UBU9 619 aaKnown RBP9.76□□□□□ -0.85
USP4-213ENST00000488520 CEP131Q9UPN4 1083 aa9.76□□□□□ -0.85
USP4-213ENST00000488520 NFASCO94856 1347 aa9.76□□□□□ -0.85
USP4-213ENST00000488520 MYH15Q9Y2K3 1946 aa9.76□□□□□ -0.85
USP4-213ENST00000488520 M0R2N6 131 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 GPR182O15218 404 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 HBP1O60381 514 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 BRD1O95696 1058 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 VTNP04004 478 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 ADH1AP07327 375 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 LAG3P18627 525 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 ZNF174Q15697 407 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 LCE2AQ5TA79 106 aaPredicted RBP9.75□□□□□ -0.85
USP4-213ENST00000488520 PPP4R3AQ6IN85 833 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 PDE12Q6L8Q7 609 aaKnown RBP9.75□□□□□ -0.85
USP4-213ENST00000488520 KCNT2Q6UVM3 1135 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 TMEM184AQ6ZMB5 413 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 LRRC55Q6ZSA7 311 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 NIPA1Q7RTP0 329 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 FAM228AQ86W67 206 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 METTL13Q8N6R0 699 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 ZNF668Q96K58 619 aaPredicted RBP9.75□□□□□ -0.85
USP4-213ENST00000488520 ZNF577Q9BSK1 485 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 IRF2BPLQ9H1B7 796 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 POMKQ9H5K3 350 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 GDPD2Q9HCC8 539 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 AGO4Q9HCK5 861 aaKnown RBP9.75□□□□□ -0.85
USP4-213ENST00000488520 TBC1D22BQ9NU19 505 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 TMEM161AQ9NX61 479 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 DDX25Q9UHL0 483 aaKnown RBP9.75□□□□□ -0.85
USP4-213ENST00000488520 PUF60Q9UHX1 559 aaKnown RBP9.75□□□□□ -0.85
USP4-213ENST00000488520 NR2E1Q9Y466 385 aa9.75□□□□□ -0.85
USP4-213ENST00000488520 TRIP11Q15643 1979 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 RALGAPA1Q6GYQ0 2036 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 CYP3A7-CYP3A51PA0A087WV96 503 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 FSD2A1L4K1 749 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 C2CD4DB7Z1M9 353 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 MEIS1O00470 390 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 ATG7O95352 703 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 CCNE2O96020 404 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 ASGR2P07307 311 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 CYP3A7P24462 503 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 CIITAP33076 1130 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 MCM7P33993 719 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 RELBQ01201 579 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 PLCB3Q01970 1234 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 ORC2Q13416 577 aaPredicted RBP9.74□□□□□ -0.85
USP4-213ENST00000488520 MTMR3Q13615 1198 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 SF3A1Q15459 793 aaKnown RBP9.74□□□□□ -0.85
USP4-213ENST00000488520 NPY5RQ15761 445 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 Q4G0T1 1027 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 TTC38Q5R3I4 469 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 ODR4Q5SWX8 454 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 FAM160B1Q5W0V3 765 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 CES5AQ6NT32 575 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 SWSAP1Q6NVH7 229 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 KANK3Q6NY19 840 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 MOXD1Q6UVY6 613 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 CCDC60Q8IWA6 550 aaPredicted RBP9.74□□□□□ -0.85
USP4-213ENST00000488520 NPAS3Q8IXF0 933 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 CKAP2LQ8IYA6 745 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 SLFN12Q8IYM2 578 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 C12orf76Q8N812 135 aaPredicted RBP9.74□□□□□ -0.85
USP4-213ENST00000488520 TMEM105Q8N8V8 129 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 RNF169Q8NCN4 708 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 ZNF558Q96NG5 402 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 CASD1Q96PB1 797 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 CYLDQ9NQC7 956 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 ZNF302Q9NR11 478 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 CFAP45Q9UL16 551 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 SORCS3Q9UPU3 1222 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 MTMR6Q9Y217 621 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 LZTS1Q9Y250 596 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 ARID2Q68CP9 1835 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 DMXL1Q9Y485 3027 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 CACNA1IQ9P0X4 2223 aa9.74□□□□□ -0.85
USP4-213ENST00000488520 IGKV6D-21A0A0A0MT36 114 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 PRR23AA6NEV1 266 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 TTLL8A6PVC2 850 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 NT5C1B-RDH14C9J2C7 533 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 ADAMTS3O15072 1205 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 NEMFO60524 1076 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 BMP15O95972 392 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 HOXB8P17481 243 aaPredicted RBP9.73□□□□□ -0.85
USP4-213ENST00000488520 ATP4AP20648 1035 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 ABL2P42684 1182 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 SLC26A2P50443 739 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 CRYBB1P53674 252 aaPredicted RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms